Evidence map›Paper›PMID 12660172›Full record

ArticleThe EMBO journal2003

Chromosomal protein HMGN1 enhances the rate of DNA repair in chromatin.

Yehudit Birger, Katherine L West, Yuri V Postnikov, Jae-Hwan Lim, Takashi Furusawa, James P Wagner, Craig S Laufer, Kenneth H Kraemer, Michael Bustin

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 142 citations in OpenAlex.

  1. Review
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  13. Article
  14. Biological Functions of HMGN Chromosomal Proteins.International journal of molecular sciences · 2020
    Review
  15. Review
  16. Neuronal Transcriptome fromFree neuropathology · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yehudit BirgerProtein Section, LM, Basic Research Laboratory, CCR, NCI, NIH, Bethesda, MD 20892, USA.
Katherine L West
Yuri V Postnikov
Jae-Hwan Lim
Takashi Furusawa
James P Wagner
Craig S Laufer
Kenneth H Kraemer
Michael Bustin
National Institutes of Health · US

Funding

Chromosomal Proteins and FunctionsZ01BC004496 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BUSTIN, MICHAEL · 1997 to 2008
$3.0M
DNA REPAIR IN HUMAN CANCER-PRONE GENETIC DISEASESZ01BC004517 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI KRAEMER, KENNETH H · 1996 to 2008
$2.7M
Intramural NIH HHS Z01 BC004517
6 · The paper itself

Abstract

We report that HMGN1, a nucleosome binding protein that destabilizes the higher-order chromatin structure, modulates the repair rate of ultraviolet light (UV)-induced DNA lesions in chromatin. Hmgn1(-/-) mouse embryonic fibroblasts (MEFs) are hypersensitive to UV, and the removal rate of photoproducts from the chromatin of Hmgn1(-/-) MEFs is decreased as compared with the chromatin of Hmgn1(+/+) MEFs; yet, host cell reactivation assays and DNA array analysis indicate that the nucleotide excision repair (NER) pathway in the Hmgn1(-/-) MEFs remains intact. The UV hypersensitivity of Hmgn1(-/-) MEFs could be rescued by transfection with plasmids expressing wild-type HMGN1 protein, but not with plasmids expressing HMGN1 mutants that do not bind to nucleosomes or do not unfold chromatin. Transcriptionally active genes, the main target of the NER pathways in mice, contain HMGN1 protein, and loss of HMGN1 protein reduces the accessibility of transcribed genes to nucleases. By reducing the compaction of the higher-order chromatin structure, HMGN1 facilitates access to UV-damaged DNA sites and enhances the rate of DNA repair in chromatin.

Indexed as

AnimalsChromatinDNA RepairEmbryo, MammalianFibroblastsGene Expression ProfilingHMGN1 ProteinMiceMice, Mutant StrainsPrecipitin TestsSkinChromatinHMGN1 Protein

Identifiers

PMID12660172
PMCPMC152887
OpenAlexW2002294822

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.