Evidence map›Paper›PMID 12659659›Full record

ArticleBMC molecular biology2003

Fragile X (CGG)n repeats induce a transcriptional repression in cis upon a linked promoter: evidence for a chromatin mediated effect.

Simon P Chandler, Pushpa Kansagra, Mark C Hirst

Open access · bronzeAbstract read
In one paragraph

Article in BMC molecular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 14 citations in OpenAlex.

  1. Of Men and Mice: Modeling the Fragile X Syndrome.Frontiers in molecular neuroscience · 2018
    Article
  2. The promise and perils of HDAC inhibitors in neurodegeneration.Annals of clinical and translational neurology · 2015
    Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Simon P ChandlerSangamo BioSciences, 501 Canal Blvd, Ste A100, Point Richmond Tech Center II, Richmond, CA 94804, USA. schandler@sangamo.com
Pushpa Kansagra
Mark C Hirst
The Open University · GBSangamo BioSciences (United States) · US

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundExpansion of an unstable (CGG)n repeat to over 200 triplets within the promoter region of the human FMR1 gene leads to extensive local methylation and transcription silencing, resulting in the loss of FMRP protein and the development of the clinical features of fragile X syndrome. The causative link between (CGG)n expansion, methylation and gene silencing is unknown, although gene silencing is associated with extensive changes to local chromatin architecture.

resultsIn order to determine the direct effects of increased repeat length on gene transcription in a chromatin context, we have examined the influence of FMR1 (CGG)n repeats upon transcription from the HSV thymidine kinase promoter in the Xenopus laevis oocyte. We observe a reduction in mRNA production directly associated with increasing repeat length, with a 90% reduction in mRNA production from arrays over 100 repeats in length. Using a kinetic approach, we show that this transcriptional repression is concomitant with chromatin maturation and, using in vitro transcription, we show that chromatin formation is a fundamental part of the repressive pathway mediated by (CGG)n repeats. Using Trichostatin A, a histone deacetylase inhibitor, we show reactivation of the silenced promoter.

conclusionsThus, isolated fragile X associated (CGG)n repeat arrays can exert a modifying and transcriptionally repressive influence over adjacent promoters and this repressive phenomenon is, in part, mediated by histone deacetylation.

Indexed as

AnimalsChromatinCytosineDisease Models, AnimalEnzyme InhibitorsFragile X SyndromeGene Expression RegulationGene SilencingGenes, ReporterGenes, ViralGenetic LinkageGuanineHerpesvirus 1, HumanHistone Deacetylase InhibitorsHistone DeacetylasesHumansChromatinCytosineEnzyme InhibitorsFXR1 protein, humanGuanineHistone Deacetylase InhibitorsHistone DeacetylasesHydroxamic AcidsRNA-Binding ProteinsThymidine Kinasetrichostatin AViral Structural Proteins

Identifiers

PMID12659659
PMCPMC153536
OpenAlexW2096418694

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.