Evidence map›Paper›PMID 12655398›Full record

ArticleMolecular genetics and genomics : MGG2003

Construction of a BAC library and generation of BAC end sequence-tagged connectors for genome sequencing of the African malaria mosquito Anopheles gambiae.

Y S Hong, J R Hogan, X Wang, A Sarkar, C Sim, B J Loftus, C Ren, E R Huff, J L Carlile, K Black and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular genetics and genomics : MGG, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Construction and characterization of BAC libraries from major grapevine cultivars.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005
    Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Y S HongCenter for Tropical Disease Research and Training, Department of Biological Sciences, University of Notre Dame, IN 46556, USA.
J R Hogan
X Wang
A Sarkar
C Sim
B J Loftus
C Ren
E R Huff
J L Carlile
K Black
H-B Zhang
M J Gardner
F H Collins
University of Notre Dame · USMitchell Institute · USTexas A&M University · US

Funding

THE ANOPHELES GAMBIAE GENOME PROJECTU01AI048846 · NIAID · UNIVERSITY OF NOTRE DAME · PI COLLINS, FRANK H. · 2001 to 2002
$2.9M
CLONING OF PLASMODIUM REFRACTORINESS GENES IN A GAMBIAER01AI044273 · NIAID · UNIVERSITY OF NOTRE DAME · PI COLLINS, FRANK H. · 1999 to 2003
$1.6M
NIAID NIH HHS R01-AI44273NIAID NIH HHS U01-AI48846
6 · The paper itself

Abstract

A Bacterial Artificial Chromosome (BAC) genomic DNA library of Anopheles gambiae, the major human malaria vector in sub-Saharan Africa, was constructed and characterized. This library (ND-TAM) is composed of 30,720 BAC clones in eighty 384-well plates. The estimated average insert size of the library is 133 kb, with an overall genome coverage of approximately 14-fold. The ends of approximately two-thirds of the clones in the library were sequenced, yielding 32,340 pair-mate ends. A statistical analysis (G-test) of the results of PCR screening of the library indicated a random distribution of BACs in the genome, although one gap encompassing the white locus on the X-chromosome was identified. Furthermore, combined with another previously constructed BAC library (ND-1), ~2,000 BACs have been physically mapped by polytene chromosomal in situ hybridization. These BAC end pair mates and physically mapped BACs have been useful for both the assembly of a fully sequenced A. gambiae genome and for linking the assembled sequence to the three polytene chromosomes. This ND-TAM library is now publicly available at both http://www.malaria.mr4.org/mr4pages/index.html/ and http://hbz.tamu.edu/, providing a valuable resource to the mosquito research community.

Indexed as

GenomeAnimalsAnophelesChromosomes, Artificial, BacterialGene LibraryGenes, InsectHumansInsect VectorsIn Situ HybridizationMalariaPolymerase Chain ReactionSequence Tagged Sites

Identifiers

PMID12655398
OpenAlexW1586102663

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.