Evidence map›Paper›PMID 12654830›Full record

ArticleInfection and immunity2003

Pneumolysin-dependent and -independent gene expression identified by cDNA microarray analysis of THP-1 human mononuclear cells stimulated by Streptococcus pneumoniae.

P David Rogers, Justin Thornton, Katherine S Barker, D Olga McDaniel, Gordon S Sacks, Edwin Swiatlo, Larry S McDaniel

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 76 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Review
  5. Review
  6. CAR-macrophage: Breaking new ground in cellular immunotherapy.Frontiers in cell and developmental biology · 2024
    Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Pneumolysin: Pathogenesis and Therapeutic Target.Frontiers in microbiology · 2020
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

P David RogersDepartments of Clinical Pharmacy and Pharmaceutical Sciences, University of Tennessee Health Science Center, Memphis, Tennessee, USA.
Justin Thornton
Katherine S Barker
D Olga McDaniel
Gordon S Sacks
Edwin Swiatlo
Larry S McDaniel
University of Mississippi Medical Center · USUniversity of Tennessee Health Science Center · USUniversity of Wisconsin–Madison · US

Funding

GENETIC IMMUNIZATION AGAINST EXTRACELLULAR BACTERIAR01AI043653 · NIAID · UNIVERSITY OF MISSISSIPPI MEDICAL CENTER · PI MCDANIEL, LARRY S · 2000 to 2004
$800k
NIAID NIH HHS AI 43653NIAID NIH HHS R01 AI043653
6 · The paper itself

Abstract

Pneumolysin is an important virulence factor of Streptococcus pneumoniae, interacting with the membranes of host cells to elicit a multitude of inflammatory responses. We used cDNA microarrays to identify genes which are responsive to S. pneumoniae in a pneumolysin-dependent and -independent fashion. The THP-1 human monocytic cell line was coincubated for 3 h with medium alone, with the virulent type 2 S. pneumoniae strain D39, or with the isogenic strain PLN, which does not express pneumolysin. RNA was isolated from the monocytes and hybridized on cDNA microarrays. Of 4,133 genes evaluated, 142 were found to be responsive in a pneumolysin-dependent fashion, whereas 40 were found to be responsive independent of pneumolysin. Genes that were up-regulated in cells exposed to D39 relative to those exposed to PLN included genes encoding proteins such as mannose binding lectin 1, lysozyme, alpha-1 catenin, cadherin 17, caspases 4 and 6, macrophage inflammatory protein 1beta (MIP-1beta), interleukin 8 (IL-8), monocyte chemotactic protein 3 (MCP-3), IL-2 receptor beta (IL-2Rbeta), IL-15 receptor alpha (IL-15Ralpha), interferon receptor 2, and prostaglandin E synthase. Down-regulated genes included those encoding complement component receptor 2/CD21, platelet-activating factor acetylhydrolase, and oxidized low-density lipoprotein receptor 1 (OLR1). Pneumolysin-independent responses included down-regulation of the genes encoding CD68, CD53, CD24, transforming growth factor beta2, and signal transducers and activators of transcription 1. These results demonstrate the striking effects of pneumolysin on the host cell upon exposure to S. pneumoniae.

Indexed as

Gene Expression RegulationOligonucleotide Array Sequence AnalysisBacterial ProteinsChemokine CCL4Enzyme-Linked Immunosorbent AssayGene Expression ProfilingHumansInterleukin-8Macrophage Inflammatory ProteinsMonocytesPneumococcal InfectionsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerStreptococcus pneumoniaeStreptolysinsTumor Cells, CulturedBacterial ProteinsChemokine CCL4Interleukin-8Macrophage Inflammatory ProteinsplY protein, Streptococcus pneumoniaeRNA, MessengerStreptolysins

Identifiers

PMID12654830
PMCPMC152049
OpenAlexW2138677630

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.