Evidence map›Paper›PMID 12652135›Full record

ArticleJournal of biomolecular NMR2003

A sensitive and robust method for obtaining intermolecular NOEs between side chains in large protein complexes.

John D Gross, Vladimir M Gelev, Gerhard Wagner

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of biomolecular NMR, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

John D GrossDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, 240 Longwood Ave. Boston, MA 02115, USA.
Vladimir M Gelev
Gerhard Wagner

Funding

T CELL SPECIFIC TRANSCRIPTION COMPLEXESP01GM047467 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1992 to 2017
$28.6M
STRUCTURAL BASIS OF TRANSLATION INITIATION BY EIF-4ER01CA068262 · NCI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1996 to 2015
$3.6M
WATER IN BACTERIORHODOPSIN, POLYCARBONATE &ORGANIC SOLVENTS: NMRP41RR000995 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BALEJA, JAMES D · 1985 to 2002
$3.5M
NMR STUDIES OF PROTEIN-TARGET INTERACTIONSR01GM038608 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WAGNER, GERHARD · 1988 to 2002
$591k
NCI NIH HHS CA68262NCRR NIH HHS RR-00995NIGMS NIH HHS GM38608NIGMS NIH HHS GM47467NIGMS NIH HHS P01 GM047467
6 · The paper itself

Abstract

A method for measuring intermolecular NOEs in protein complexes based on asymmetric sample deuteration is described. (13)C/(1)H-I,L,V-methyl, U-(2)H labeled protein is produced using the biosynthetic precursors [gamma-(13)C]-alpha-ketobutyrate and [gamma,gamma'-(13)C(2)]-alpha-ketoisovalerate. The labeled protein is mixed with its unlabeled binding partner and a 3D (13)C-HMQC-NOESY is recorded, yielding unambiguous intermolecular aromatic/methyl NOEs. A simple synthesis of the biosynthetic precursors via reaction of diethyl oxalate with alkyl Grignard compounds is reported. The method is demonstrated for a 35 kDa heterodimeric protein complex dissolved in a CHAPS micelle. This approach will facilitate the solution structure determination of protein/protein, protein/ligand or protein/nucleic acid complexes.

Indexed as

ButyratesCholic AcidsEukaryotic Initiation Factor-4EHemiterpenesIsotopesKeto AcidsLigandsMagnetic Resonance SpectroscopyMicellesModels, ChemicalOxalatesProteinsSaccharomyces cerevisiaeSensitivity and SpecificityStatistics as Topic3-((3-cholamidopropyl)dimethylammonium)-1-propanesulfonatealpha-ketobutyric acidalpha-ketoisovalerateButyratesCholic AcidsEukaryotic Initiation Factor-4EHemiterpenesIsotopesKeto AcidsLigandsMicellesOxalatesProteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.