Evidence map›Paper›PMID 12650626›Full record

ArticlePlant molecular biology2003

Phototropin 1 is required for high-fluence blue-light-mediated mRNA destabilization.

Kevin M Folta, Lon S Kaufman

Abstract read
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In one paragraph

Article in Plant molecular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
  2. Article
  3. International journal of molecular sciences · 2021
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Plant flavoprotein photoreceptors.Plant & cell physiology · 2015
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. The Cryptochrome Blue Light Receptors.The arabidopsis book · 2010
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Kevin M FoltaLaboratory for Molecular Biology, Department of Biological Sciences, University of Illinois at Chicago, 900 S. Ashland Avenue M/C 567, Chicago, IL 60607, USA.
Lon S Kaufman
University of Florida · USU.S. Horticultural Research Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Irradiation of etiolated wild-type Arabidopsis thaliana seedlings with a single pulse of blue (B) light with a total fluence equal to that of 1 min of sunlight causes the destabilization of nuclear-encoded Lhcb transcripts. Transcript destabilization is not observed in phototropin1 (phot1, formerly nph1) mutant seedlings, indicating that phot1 is likely the photoreceptor mediating this response. Destabilization is also absent in nph3 mutants, but occurs normally in nph4 mutants. The rates of Lhcb transcription and B low-fluence-induced Lhcb transcript accumulation are normal in phot1 seedlings, confirming that photl regulates destabilization, not a change in transcription. A similar pattern of regulation is observed for the chloroplast-encoded rbcL transcript. The lack of destabilization of a second chloroplast encoded transcript, psbD, indicates that the phot1/B-high-fluence system does not result in a general destabilization of all chloroplast transcripts. Localized sequence similarity between the Lhcb 5'-UTR and the rbcL 3'-UTR suggests a similar mechanism of destabilization even though the two transcripts are located in different sub-cellular compartments. The high-fluence threshold of phot1-mediated RNA destabilization contrasts with the low-fluence threshold required for phot1-directed first-positive phototropic curvature. This study indicates that phot1, like phytochrome, can discriminate between several fluence ranges and direct responses in specific tissues or different sub-cellular compartments.

Indexed as

Drosophila ProteinsEye ProteinsPhotoreceptor Cells, InvertebrateArabidopsisArabidopsis ProteinsCryptochromesFlavoproteinsGene Expression Regulation, PlantLightMutationPhotosynthetic Reaction Center Complex ProteinsPhotosystem II Protein ComplexReceptors, G-Protein-CoupledRibulose-Bisphosphate CarboxylaseRNA, MessengerRNA StabilityArabidopsis ProteinsCRY1 protein, Arabidopsiscry protein, DrosophilaCryptochromesDrosophila ProteinsEye ProteinsFlavoproteinsNPH3 protein, ArabidopsisPhotosynthetic Reaction Center Complex ProteinsPhotosystem II Protein ComplexRbcL protein, plastidReceptors, G-Protein-CoupledRibulose-Bisphosphate CarboxylaseRNA, Messenger

Identifiers

PMID12650626
OpenAlexW102653079

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.