Evidence map›Paper›PMID 12649496›Full record

ArticleRNA (New York, N.Y.)2003

Antagonistic regulation of alpha-actinin alternative splicing by CELF proteins and polypyrimidine tract binding protein.

Natalia Gromak, Arianne J Matlin, Thomas A Cooper, Christopher W J Smith

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 105 citations in OpenAlex.

  1. Review
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  14. Review
  15. Diverse regulation of 3' splice site usage.Cellular and molecular life sciences : CMLS · 2015
    Review
  16. Article
  17. Article
  18. Article
  19. Bcl-x pre-mRNA splicing regulates brain injury after neonatal hypoxia-ischemia.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2012
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Natalia GromakDepartment of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK.
Arianne J Matlin
Thomas A Cooper
Christopher W J Smith
University of Cambridge · GBBaylor College of Medicine · US

Funding

TROPONIN T ALTERNATIVE SPLICING IN EMBRYONIC HEARTR01HL045565 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS A · 1996 to 2018
$5.5M
TROPONIN T ALTERNATIVE SPLICING IN EMBRYONIC HEARTR29HL045565 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI COOPER, THOMAS ALEXANDER · 1991 to 1995
–
NHLBI NIH HHS HL45565NHLBI NIH HHS R01 HL045565Wellcome Trust
6 · The paper itself

Abstract

The alpha-actinin gene has a pair of alternatively spliced exons. The smooth muscle (SM) exon is repressed in most cell types by polypyrimidine tract binding protein (PTB). CELF (CUG-BP and ETR3-like factors) family proteins, splicing regulators whose activities are altered in myotonic dystrophy, were found to coordinately regulate selection of the two alpha-actinin exons. CUG-BP and ETR3 activated the SM exon, and along with CELF4 they were also able to repress splicing of the NM (nonmuscle) exon both in vivo and in vitro. Activation of SM exon splicing was associated with displacement of PTB from the polypyrimidine tract by binding of CUG-BP at adjacent sites. Our data provides direct evidence for the activity of CELF proteins as both activators and repressors of splicing within a single-model system of alternative splicing, and suggests a model whereby alpha-actinin alternative splicing is regulated by synergistic and antagonistic interactions between members of the CELF and PTB families.

Indexed as

ActininAlternative SplicingBase SequenceCELF1 ProteinCELF ProteinsGene Expression RegulationHumansIn Vitro TechniquesMolecular Sequence DataNerve Tissue ProteinsPolypyrimidine Tract-Binding ProteinRNA-Binding ProteinsRNA PrecursorsActininCELF1 ProteinCELF1 protein, humanCELF2 protein, humanCELF4 protein, humanCELF ProteinsNerve Tissue ProteinsPolypyrimidine Tract-Binding ProteinRNA-Binding ProteinsRNA Precursors

Identifiers

PMID12649496
PMCPMC1370411
OpenAlexW2159958242

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.