Evidence map›Paper›PMID 12648932›Full record

ArticleJournal of the American Society for Mass Spectrometry2003

Top down characterization of secreted proteins from Mycobacterium tuberculosis by electron capture dissociation mass spectrometry.

Ying Ge, Mariam El-Naggar, Siu Kwan Sze, Han Bin Oh, Tadhg P Begley, Fred W McLafferty, Helena Boshoff, Clifton E Barry

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Review
  3. Novel Strategies to Address the Challenges in Top-Down Proteomics.Journal of the American Society for Mass Spectrometry · 2021
    Review
  4. Accurate Identification of Closely RelatedFrontiers in cellular and infection microbiology · 2021
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Electron transfer dissociation of doubly sodiated glycerophosphocholine lipids.Journal of the American Society for Mass Spectrometry · 2007
    Article
  19. Article
  20. The role of conformation on electron capture dissociation of ubiquitin.Journal of the American Society for Mass Spectrometry · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Ying GeDepartment of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, NY 14853-1301, USA.
Mariam El-Naggar
Siu Kwan Sze
Han Bin Oh
Tadhg P Begley
Fred W McLafferty
Helena Boshoff
Clifton E Barry
Cornell University · US

Funding

PATHOGENIC MECHANISMS OF MYCOBACTERIUM TUBERCULOSISZ01AI000693 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI BARRY, CLIFTON · 1993 to 2008
$8.1M
Pathogenesis, Latency and Drug Resistance Of Mycobacterium TuberculosisZ01AI000783 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI BARRY, CLIFTON · 1997 to 2008
$5.8M
The mechanistic enzymology of thiamin biosynthesisR37DK044083 · NIDDK · TEXAS A&M UNIVERSITY · PI BEGLEY, TADHG P. · 2008 to 2017
$3.7M
The mechanistic enzymology of thiamin biosynthesisR01DK044083 · NIDDK · CORNELL UNIVERSITY ITHACA · PI BEGLEY, TADHG P. · 1991 to 2007
$2.5M
MASS SPECTROMETRY IN BIOMEDICAL RESEARCHR01GM016609 · NIGMS · CORNELL UNIVERSITY ITHACA · PI MC LAFFERTY, FRED WARREN · 1985 to 2010
$1.9M
MASS SPECTROMETRY IN BIOMEDICAL RESEARCHR37GM016609 · NIGMS · CORNELL UNIVERSITY ITHACA · PI MC LAFFERTY, FRED W · 1992 to 2001
$639k
Intramural NIH HHS Z01 AI000783NIDDK NIH HHS DK44083NIGMS NIH HHS GM16609
6 · The paper itself

Abstract

Secreted proteins of Mycobacterium tuberculosis are implicated in its disease pathogenesis and so are considered as potential diagnostic and vaccine candidates. The search for these has been slow, even though the entire genome sequence of M. tuberculosis is now available; of the 620 protein spots resolved by 2-D gel electrophoresis, 114 secreted proteins have been identified, but for only 13 has the primary structure been partly characterized. For comparison, in this top down mass spectrometry (MS) approach the secreted proteins were precipitated from cell culture filtrate, resuspended, and examined directly by electrospray ionization (ESI) Fourier transform MS. The ESI spectra of three precipitates showed 93, 535, and 369 molecular weight (M(r)) values, for a total of 689 different values. However, only approximately 10% of these values matched (+/-1 Da) the DNA predicted M(r) values, but these identifications were unreliable. Of nine molecular ions characterized by MS/MS, only one protein match was confirmed, and its isotopic molecular ions were overlapped by those of another protein. MS/MS identified a total of ten proteins by sequence tag search, of which three were unidentified previously. The low success of M(r) matching was due to unusually extensive posttranslational modifications, including loss of a signal sequence, loss of the N-terminal residue, proteolytic degradation, oxidation, and glycosylation. Although in eubacteria the latter is relatively rare, a 9 kDa protein showed 7 hexose attachments and two 20 kDa proteins each had 20 attachments. For MS/MS, electron capture dissociation was especially effective.

Indexed as

Amino Acid SequenceConcanavalin AElectronsGlycoproteinsMolecular Sequence DataMolecular WeightMycobacterium tuberculosisProteinsSpectrometry, Mass, Electrospray IonizationConcanavalin AGlycoproteinsProteins

Identifiers

PMID12648932
OpenAlexW1972009772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.