Evidence map›Paper›PMID 12644662›Full record

ArticlePlant physiology2003

Mapping the proteome of barrel medic (Medicago truncatula).

Bonnie S Watson, Victor S Asirvatham, Liangjiang Wang, Lloyd W Sumner

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Plant physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 228 citations in OpenAlex.

  1. The Effects ofPlants (Basel, Switzerland) · 2023
    Article
  2. The Role ofPlants (Basel, Switzerland) · 2022
    Article
  3. Article
  4. Mycorrhiza-Induced Alterations in Metabolome ofPlants (Basel, Switzerland) · 2021
    Article
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  19. Article
  20. Sub-cellular proteomics of Medicago truncatula.Frontiers in plant science · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Bonnie S WatsonPlant Biology Division, The Samuel Roberts Noble Foundation, PO Box 2180, Ardmore, Oklahoma 73402, USA.
Victor S Asirvatham
Liangjiang Wang
Lloyd W Sumner
Noble Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A survey of six organ-/tissue-specific proteomes of the model legume barrel medic (Medicago truncatula) was performed. Two-dimensional polyacrylamide gel electrophoresis reference maps of protein extracts from leaves, stems, roots, flowers, seed pods, and cell suspension cultures were obtained. Five hundred fifty-one proteins were excised and 304 proteins identified using peptide mass fingerprinting and matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Nanoscale high-performance liquid chromatography coupled with tandem quadrupole time-of-flight mass spectrometry was used to validate marginal matrix-assisted laser desorption ionization time-of-flight mass spectrometry protein identifications. This dataset represents one of the most comprehensive plant proteome projects to date and provides a basis for future proteome comparison of genetic mutants, biotically and abiotically challenged plants, and/or environmentally challenged plants. Technical details concerning peptide mass fingerprinting, database queries, and protein identification success rates in the absence of a sequenced genome are reported and discussed. A summary of the identified proteins and their putative functions are presented. The tissue-specific expression of proteins and the levels of identified proteins are compared with their related transcript abundance as quantified through EST counting. It is estimated that approximately 50% of the proteins appear to be correlated with their corresponding mRNA levels.

Indexed as

Amino Acid SequenceDatabases, GeneticFlowersFruitMedicagoMolecular Sequence DataPeptide MappingPlant LeavesPlant ProteinsPlant RootsPlant StemsProteomeProteomicsSeedsPlant ProteinsProteome

Identifiers

PMID12644662
PMCPMC166875
OpenAlexW2104412732

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.