Evidence map›Paper›PMID 12642617›Full record

ArticleThe Journal of cell biology2003

Formation of filopodia-like bundles in vitro from a dendritic network.

Danijela Vignjevic, Defne Yarar, Matthew D Welch, John Peloquin, Tatyana Svitkina, Gary G Borisy

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 244 citations in OpenAlex.

  1. Review
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  4. Liquid-like condensates mediate competition between actin branching and bundling.Proceedings of the National Academy of Sciences of the United States of America · 2024
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46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Danijela VignjevicNorthwestern University Medical School, Department of Cell and Molecular Biology, 303 E. Chicago Ave., Ward 8-063, Chicago, IL 60611, USA.
Defne Yarar
Matthew D Welch
John Peloquin
Tatyana Svitkina
Gary G Borisy
Northwestern University · USUniversity of California, Berkeley · US

Funding

MECHANISM OF ACTIN-BASED CELL MOTILITYR01GM062431 · NIGMS · NORTHWESTERN UNIVERSITY · PI BORISY, GARY G · 2001 to 2004
$1.1M
NIGMS NIH HHS GM 62431NIGMS NIH HHS IU54 GM 63126NIGMS NIH HHS R01 GM062431
6 · The paper itself

Abstract

We report the development and characterization of an in vitro system for the formation of filopodia-like bundles. Beads coated with actin-related protein 2/3 (Arp2/3)-activating proteins can induce two distinct types of actin organization in cytoplasmic extracts: (1) comet tails or clouds displaying a dendritic array of actin filaments and (2) stars with filament bundles radiating from the bead. Actin filaments in these bundles, like those in filopodia, are long, unbranched, aligned, uniformly polar, and grow at the barbed end. Like filopodia, star bundles are enriched in fascin and lack Arp2/3 complex and capping protein. Transition from dendritic to bundled organization was induced by depletion of capping protein, and add-back of this protein restored the dendritic mode. Depletion experiments demonstrated that star formation is dependent on Arp2/3 complex. This poses the paradox of how Arp2/3 complex can be involved in the formation of both branched (lamellipodia-like) and unbranched (filopodia-like) actin structures. Using purified proteins, we showed that a small number of components are sufficient for the assembly of filopodia-like bundles: Wiskott-Aldrich syndrome protein (WASP)-coated beads, actin, Arp2/3 complex, and fascin. We propose a model for filopodial formation in which actin filaments of a preexisting dendritic network are elongated by inhibition of capping and subsequently cross-linked into bundles by fascin.

Indexed as

Tissue ExtractsActin CytoskeletonActin-Related Protein 2AnimalsCarrier ProteinsCell Culture TechniquesCell MovementCytoskeletal ProteinsDendritesGrowth ConesMicrofilament ProteinsMicroscopy, ElectronModels, BiologicalProteinsPseudopodiaRabbitsActin-Related Protein 2Carrier ProteinsCytoskeletal ProteinsfascinMicrofilament ProteinsProteinsTissue ExtractsWas protein, ratWiskott-Aldrich Syndrome Protein

Identifiers

PMID12642617
PMCPMC2173766
OpenAlexW2161042020

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.