Evidence map›Paper›PMID 12642603›Full record

ArticleThe Journal of experimental medicine2003

Interferon and granulopoiesis signatures in systemic lupus erythematosus blood.

Lynda Bennett, A Karolina Palucka, Edsel Arce, Victoria Cantrell, Josef Borvak, Jacques Banchereau, Virginia Pascual

2 registry-linked trialsOpen access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 967 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
967citing papers in PubMed, 3 pooled it
22.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01780857 completednot on this mapstarted 2013, after this paper: background citation

The Immune Signature of Palmoplantar Pustulosis

TypeobservationalSponsorBaylor Research InstituteRan2013 to 2014Enrolled30ConditionsPalmoplantar Pustulosis
NCT02021422 phase1completednot on this mapstarted 2013, after this paper: background citation

A Pilot, Prospective, Non-randomized Evaluation of the Safety of Anakinra Plus Standard Chemotherapy Regimens in Metastatic Pancreatic Ductal Adenocarcinoma Patients

TypeinterventionalSponsorBaylor Research InstituteRan2013 to 2021Enrolled13ConditionsPancreas CancerArmsanakinra, Oxaliplatin, Irinotecan, fluorouracil
3 · Its place in the literature

Who cites it

967 citing papers in PubMed, 3 syntheses or guidelines pooled it, 1,959 citations in OpenAlex.

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907 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Lynda BennettBaylor Institute for Immunology Research, Dallas, TX 75204, USA.
A Karolina Palucka
Edsel Arce
Victoria Cantrell
Josef Borvak
Jacques Banchereau
Virginia Pascual
Baylor Institute for Rehabilitation · US

Funding

ECTOPIC GERMINAL CENTER REACTION IN SYSTEMIC LUPUSR01AR046589 · NIAMS · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI PASCUAL, MARIA VIRGINIA · 2000 to 2004
$1.3M
BAA-CLIN. TRIALS &CLIN. MARKERS FOR IMMUNILOGIC DISEASE-266005412N01AI005412 · NIAID · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI PASCUAL, MARIA VIRGINIA · 2000 to 2003
$347k
NIAID NIH HHS N01 AI005412NIAID NIH HHS N01-AI-05412NIAMS NIH HHS R01 AR046589NIAMS NIH HHS R01 AR46589-01
6 · The paper itself

Abstract

Systemic lupus erythematosus (SLE) is a prototype systemic autoimmune disease characterized by flares of high morbidity. Using oligonucleotide microarrays, we now show that active SLE can be distinguished by a remarkably homogeneous gene expression pattern with overexpression of granulopoiesis-related and interferon (IFN)-induced genes. Using the most stringent statistical analysis (Bonferroni correction), 15 genes were found highly up-regulated in SLE patients, 14 of which are targets of IFN and one, defensin DEFA-3, a major product of immature granulocytes. A more liberal correction (Benjamini and Hochberg correction) yielded 18 additional genes, 12 of which are IFN-regulated and 4 granulocyte-specific. Indeed immature neutrophils were identified in a large fraction of SLE patients white blood cells. High dose glucocorticoids, a standard treatment of disease flares, shuts down the interferon signature, further supporting the role of this cytokine in SLE. The expression of 10 genes correlated with disease activity according to the SLEDAI. The most striking correlation (P < 0.001, r = 0.55) was found with the formyl peptide receptor-like 1 protein that mediates chemotactic activities of defensins. Therefore, while the IFN signature confirms the central role of this cytokine in SLE, microarray analysis of blood cells reveals that immature granulocytes may be involved in SLE pathogenesis.

Indexed as

Gene Expression ProfilingLeukopoiesisChildFemaleGene Expression RegulationGranulocytesHumansInterferon-alphaLupus Erythematosus, SystemicMaleOligonucleotide Array Sequence AnalysisStatistics as TopicInterferon-alpha

Identifiers

PMID12642603
PMCPMC2193846
OpenAlexW2168888135

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.