Evidence map›Paper›PMID 12640127›Full record

ArticleMolecular and cellular biology2003

Changes in histone acetylation are associated with differences in accessibility of V(H) gene segments to V-DJ recombination during B-cell ontogeny and development.

Kristen Johnson, Cristina Angelin-Duclos, Sinae Park, Kathryn L Calame

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
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  8. Biased Immunoglobulin Light Chain Gene Usage in the Shark.Journal of immunology (Baltimore, Md. : 1950) · 2015
    Article
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  14. Review
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  18. RAG: a recombinase diversified.Nature immunology · 2009
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Kristen JohnsonDepartment of Microbiology, Columbia University College of Physicians and Surgeons, New York, New York 10032, USA.
Cristina Angelin-Duclos
Sinae Park
Kathryn L Calame
Institute of Molecular Biology and Biophysics · RUColumbia University · US

Funding

B LYMPHOCYTE INDUCED MATURATION PROTEINR01AI043576 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALAME, KATHRYN L. · 1998 to 2007
$2.7M
TRANSCRIPTION OF IMMUNOGLUBULIN HEAVY CHAIN GENESR01GM029361 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CALAME, KATHRYN L. · 1985 to 2001
$831k
NIAID NIH HHS R01 AI043576NIAID NIH HHS R01 AI43576NIGMS NIH HHS R01 GM29361PHS HHS 5T32 A10752
6 · The paper itself

Abstract

Although V(D)J recombination is thought to be regulated by changes in the accessibility of chromatin to the recombinase machinery, the mechanisms responsible for establishing "open" chromatin are poorly understood. We performed a detailed study of the acetylation status of histones associated with 11 V(H) gene segments, their flanking regions, and various intergenic elements during B-cell development and ontogeny, when V(D)J recombination is highly regulated. Histone H4 shows higher and more-regulated acetylation than does histone H3 in the V(H) locus. In adult pro-B cells, V(H) gene segments are acetylated prior to V(D)J rearrangement, with higher acetylation associated with J(H)-distal V(H) gene segments. While large regions of the V(H) locus have similar patterns of histone acetylation, acetylation is narrowly confined to the gene segments, their flanking promoters, and recombinase signal sequence elements. Thus, histone acetylation in the V(H) locus is both locally and globally regulated. Increased histone acetylation accompanies preferential recombination of J(H)-proximal V(H) gene segments in early B-cell ontogeny, and decreased histone acetylation accompanies inhibition of V-DJ recombination in a transgenic model of immunoglobulin heavy-chain allelic exclusion. Thus, changes in histone acetylation appear to be important for both promotion and inhibition of V-DJ rearrangement during B-cell ontogeny and development.

Indexed as

3T3 CellsAcetylationAnimalsB-LymphocytesBone Marrow CellsCell DifferentiationCell DivisionCells, CulturedGene Rearrangement, B-LymphocyteGenes, ImmunoglobulinHistonesHomeodomain ProteinsHumansImmunoglobulin Joining RegionImmunoglobulin Variable RegionMiceHistonesHomeodomain ProteinsImmunoglobulin Joining RegionImmunoglobulin Variable RegionRAG-1 protein

Identifiers

PMID12640127
PMCPMC150727
OpenAlexW2165057782

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.