Evidence map›Paper›PMID 12632695›Full record

ArticleMolecular biotechnology2003

Culture-induced variation in plants of Coffea arabica cv. caturra rojo, regenerated by direct and indirect somatic embryogenesis.

L Felipe Sanchez-Teyer, Francisco Quiroz-Figueroa, Victor Loyola-Vargas, Diogenes Infante

Abstract readComparative StudyEvaluation Study
PubMed Publisher
In one paragraph

Article in Molecular biotechnology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. In Vitro Conversion ofPlants (Basel, Switzerland) · 2023
    Article
  2. Comparative Study of the Genetic and Biochemical Variability ofInternational journal of molecular sciences · 2021
    Article
  3. Article
  4. Article
  5. Recent advances in the genetic transformation of coffee.Biotechnology research international · 2012
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

L Felipe Sanchez-TeyerCentro de Investigacíon Cientifica de Yucatan, Merida, Mexico.
Francisco Quiroz-Figueroa
Victor Loyola-Vargas
Diogenes Infante

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amplified fragment-length polymorphism (AFLP) was used to evaluate the stability of DNA in regenerated plantlets of Coffea arabica obtained by direct (DSE) and indirect somatic embryogenesis (ISE). Cluster analysis using the unweighted pair-group method (UPGMA), showed no specific grouping pattern related to the type of embryogenesis. These results suggest that the somatic embryogenesis (SE) process has a mechanism for the selection of normal and competent cells. Bulked DNA from regenerated plants obtained by DSE and ISE, and from the mother plants, was used to characterize specific AFLP fragments associated with each SE process. Twenty-three primer combinations were tested. A total of 1446 bands were analyzed, with 11.4% being polymorphic and 84% being specific for regenerated plants. Furthermore, specific bands were detected for DSE, ISE, and the mother plants. These results indicate that the SE process induces rearrangements at the DNA level and demonstrates discrepancies between the mechanisms involved in each SE process. Coffea arabica breeding programs that involve DSE and ISE can use AFLP as an additional tool for assessing DNA stability.

Indexed as

BreedingCloning, OrganismCoffeaCulture TechniquesDNA FingerprintingDNA, PlantGene Expression ProfilingGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGenetic VariationPlant LeavesPolymorphism, Restriction Fragment LengthRandom Amplified Polymorphic DNA TechniqueSequence AlignmentSequence Analysis, DNASequence HomologyDNA, Plant

Identifiers

PMID12632695

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.