Evidence map›Paper›PMID 12628930›Full record

ArticleThe EMBO journal2003

In vivo transposition mediated by V(D)J recombinase in human T lymphocytes.

Terri L Messier, J Patrick O'Neill, Sai-Mei Hou, Janice A Nicklas, Barry A Finette

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 97 citations in OpenAlex.

  1. Review
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  9. Review
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  11. Review
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  13. Article
  14. Article
  15. V(D)J recombination: Born to be wild.Seminars in cancer biology · 2010
    Review
  16. Review
  17. RAG: a recombinase diversified.Nature immunology · 2009
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Terri L MessierDepartment of Pediatrics, University of Vermont, Burlington, VT 05405, USA.
J Patrick O'Neill
Sai-Mei Hou
Janice A Nicklas
Barry A Finette
University of Vermont · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rearrangement of immunoglobulin (Ig) and T-cell receptor (TCR) genes in lymphocytes by V(D)J recombinase is essential for immunological diversity in humans. These DNA rearrangements involve cleavage by the RAG1 and RAG2 (RAG1/2) recombinase enzymes at recombination signal sequences (RSS). This reaction generates two products, cleaved signal ends and coding ends. Coding ends are ligated by non-homologous end-joining proteins to form a functional Ig or TCR gene product, while the signal ends form a signal joint. In vitro studies have demonstrated that RAG1/2 are capable of mediating the transposition of cleaved signal ends into non-specific sites of a target DNA molecule. However, to date, in vivo transposition of signal ends has not been demonstrated. We present evidence of in vivo inter-chromosomal transposition in humans mediated by V(D)J recombinase. T-cell isolates were shown to contain TCRalpha signal ends from chromosome 14 inserted into the X-linked hypo xanthine-guanine phosphoribosyl transferase locus, resulting in gene inactivation. These findings implicate V(D)J recombinase-mediated transposition as a mutagenic mechanism capable of deleterious genetic rearrangements in humans.

Indexed as

Gene Rearrangement, T-LymphocyteRecombination, GeneticBase SequenceBinding SitesChromosomes, Human, Pair 14Chromosomes, Human, XClone CellsDNA NucleotidyltransferasesGene SilencingGenes, ImmunoglobulinGenes, T-Cell Receptor alphaHomeodomain ProteinsHumansHypoxanthine PhosphoribosyltransferaseImmunoglobulin Joining RegionModels, GeneticDNA NucleotidyltransferasesHomeodomain ProteinsHypoxanthine PhosphoribosyltransferaseImmunoglobulin Joining RegionReceptors, Antigen, T-CellVDJ Recombinases

Identifiers

PMID12628930
PMCPMC151080
OpenAlexW1983894431

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.