Evidence map›Paper›PMID 12626709›Full record

ArticleNucleic acids research2003

Complete sequence of the mitochondrial genome of Tetrahymena thermophila and comparative methods for identifying highly divergent genes.

Clifford F Brunk, Louis C Lee, Anne B Tran, Jinliang Li

Abstract readComparative Study
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
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  11. Structures ofScience (New York, N.Y.) · 2022
    Article
  12. Intraspecies Variation inMicroorganisms · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Genetic ablation of the mitoribosome in the malaria parasiteThe Journal of biological chemistry · 2020
    Article
  17. Article
  18. Review
  19. The mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Clifford F BrunkDepartment of Organismic Biology, Ecology and Evolution, University of California-Los Angeles, Los Angeles, CA 90095-1606, USA. cbrunk@ucla.edu
Louis C Lee
Anne B Tran
Jinliang Li

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The complete sequence of the mitochondrial genome of Tetrahymena thermophila has been determined and compared with the mitochondrial genome of Tetrahymena pyriformis. The sequence similarity clearly indicates homology of the entire T.thermophila and T.pyriformis mitochondrial genomes. The T.thermophila genome is very compact, most of the intergenic regions are short (only three are longer than 63 bp) and comprise only 3.8% of the genome. The nad9 gene is tandemly duplicated in T.thermophila. Long terminal inverted repeats and the nad9 genes are undergoing concerted evolution. There are 55 putative genes: three ribosomal RNA genes, eight transfer RNA genes, 22 proteins with putatively assigned functions and 22 additional open reading frames of unknown function. In order to extend indications of homology beyond amino acid sequence similarity we have examined a number of physico-chemical properties of the mitochondrial proteins, including theoretical pI, molecular weight and particularly the predicted transmembrane spanning regions. This approach has allowed us to identify homologs to ymf58 (nad4L), ymf62 (nad6) and ymf60 (rpl6).

Indexed as

Amino Acid SequenceAnimalsDNA, MitochondrialGenes, ProtozoanGenetic VariationMolecular Sequence DataSequence Homology, Amino AcidSpecies SpecificityTetrahymenaTetrahymena pyriformisTetrahymena thermophilaDNA, Mitochondrial

Identifiers

PMID12626709
PMCPMC152872

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.