Evidence map›Paper›PMID 12620874›Full record

ArticleApplied and environmental microbiology2003

PCR detection of virulence genes in Yersinia enterocolitica and Yersinia pseudotuberculosis and investigation of virulence gene distribution.

P Thoerner, C I Bin Kingombe, K Bögli-Stuber, B Bissig-Choisat, T M Wassenaar, J Frey, T Jemmi

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 211 citations in OpenAlex.

  1. Trial
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  6. Laboratory investigation of causes of bovine abortion and stillbirth in the Republic of Korea, 2014-2020.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2024
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  8. EnteropathogenicPathogens (Basel, Switzerland) · 2024
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  9. Microorganisms · 2023
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  15. Occurrence and Genetic Correlations ofPathogens (Basel, Switzerland) · 2021
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  20. Prevalence, Virulence and Antimicrobial Susceptibility ofPathogens (Basel, Switzerland) · 2021
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

P ThoernerSection of Microbiology, Federal Veterinary Office, Schwarzenburgstrasse 161, CH-3003 Bern-Liebefeld, Switzerland.
C I Bin Kingombe
K Bögli-Stuber
B Bissig-Choisat
T M Wassenaar
J Frey
T Jemmi
Molecular Microbiology and Genomics Consultants (Germany) · DEUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PCR-based assays were developed for the detection of plasmid- and chromosome-borne virulence genes in Yersinia enterocolitica and Yersinia pseudotuberculosis, to investigate the distribution of these genes in isolates from various sources. The results of PCR genotyping, based on 5 virulence-associated genes of 140 strains of Y. enterocolitica, were compared to phenotypic tests, such as biotyping and serotyping, and to virulence plasmid-associated properties such as calcium-dependent growth at 37 degrees C and Congo red uptake. The specificity of the PCR results was validated by hybridization. Genotyping data correlated well with biotype data, and most biotypes resulted in (nearly) homogeneous genotypes for the chromosomal virulence genes (ystA, ystB, and ail); however, plasmid-borne genes (yadA and virF) were detected with variable efficiency, due to heterogeneity within the bacterial population for the presence of the virulence plasmid. Of the virulence genes, only ystB was present in biotype 1A; however, within this biotype, pathogenic and apathogenic isolates could not be distinguished based on the detection of virulence genes. Forty Y. pseudotuberculosis isolates were tested by PCR for the presence of inv, yadA, and lcrF. All isolates were inv positive, and 88% of the isolates contained the virulence plasmid genes yadA and lcrF. In conclusion, this study shows that genotyping of Yersinia spp., based on both chromosome- and plasmid-borne virulence genes, is feasible and informative and can provide a rapid and reliable genotypic characterization of field isolates.

Indexed as

AnimalsBacterial ProteinsChromosomes, BacterialGenotypeHumansPlasmidsPolymerase Chain ReactionSensitivity and SpecificitySerotypingVirulenceVirulence FactorsYersinia enterocoliticaYersinia InfectionsYersinia pseudotuberculosisBacterial ProteinsVirulence Factors

Identifiers

PMID12620874
PMCPMC150046
OpenAlexW2054372867

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.