Evidence map›Paper›PMID 12620860›Full record

ArticleApplied and environmental microbiology2003

Prevalence of bacteria of division TM7 in human subgingival plaque and their association with disease.

Mary M Brinig, Paul W Lepp, Cleber C Ouverney, Gary C Armitage, David A Relman

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed, 1 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 1 synthesis or guideline pooled it, 219 citations in OpenAlex.

  1. Pooled it
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  11. Frontiers in dental medicine · 2025
    Article
  12. Beyond genomics in Patescibacteria: A trove of unexplored biology packed into ultrasmall bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Article
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43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Mary M BrinigDepartment of Microbiology and Immunology, Stanford University, Stanford, CA, USA. mbrinig@stanford.edu
Paul W Lepp
Cleber C Ouverney
Gary C Armitage
David A Relman
VA Palo Alto Health Care System · USStanford Medicine · USUniversity of California, San Francisco · US

Funding

MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
Proteomics/GenomicsP30DK056339 · NIDDK · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2001 to 2010
$10.4M
TRANSGENIC MODELS WITH SKELETAL REPAIR PHENOTYPESP60DE013058 · NIDCR · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI WALSH, MARGARET MARY · 1999 to 2003
$9.1M
MOLECULAR ANALYSIS OF SUBGINGIVAL MICROBIAL DIVERSITYR01DE013541 · NIDCR · STANFORD UNIVERSITY · PI RELMAN, DAVID A · 2000 to 2003
$842k
NIAID NIH HHS 5T32 AI 07328NIAID NIH HHS T32 AI007328NIDCR NIH HHS P60 DE013058NIDCR NIH HHS P60 DE 13058NIDCR NIH HHS R01 DE013541NIDCR NIH HHS R01 DE 13541NIDDK NIH HHS DK 56339NIDDK NIH HHS P30 DK056339
6 · The paper itself

Abstract

Members of the uncultivated bacterial division TM7 have been detected in the human mouth, but little information is available regarding their prevalence and diversity at this site. Human subgingival plaque samples from healthy sites and sites exhibiting various stages of periodontal disease were analyzed for the presence of TM7 bacteria. TM7 ribosomal DNA (rDNA) was found in 96% of the samples, and it accounted for approximately 0.3%, on average, of all bacterial rDNA in the samples as determined by real-time quantitative PCR. Two new phylotypes of this division were identified, and members of the division were found to exhibit filamentous morphology by fluorescence in situ hybridization. The abundance of TM7 rDNA relative to total bacterial rDNA was higher in sites with mild periodontitis (0.54% +/- 0.1%) than in either healthy sites (0.21% +/- 0.05%, P < 0.01) or sites with severe periodontitis (0.29% +/- 0.06%, P < 0.05). One division subgroup, the I025 phylotype, was detected in 1 of 18 healthy samples and 38 of 58 disease samples. These data suggest that this phylotype, and the TM7 bacterial division in general, may play a role in the multifactorial process leading to periodontitis.

Indexed as

BacteriaDental PlaqueDNA, BacterialDNA, RibosomalGingivaHumansIn Situ Hybridization, FluorescencePeriodontal DiseasesPhylogenyPolymerase Chain ReactionPrevalenceRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID12620860
PMCPMC150096
OpenAlexW2016952802

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.