Evidence map›Paper›PMID 12620126›Full record

ArticleGenome biology2003

Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database.

Yunxia Zhu, Benjamin L King, Babak Parvizi, Brian P Brunk, Christian J Stoeckert, John Quackenbush, Joel Richardson, Carol J Bult

Abstract readComparative Study
In one paragraph

Article in Genome biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Identification of mouse SLC39A8 as the transporter responsible for cadmium-induced toxicity in the testis.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yunxia ZhuMouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA. yz@informatics.jax.org
Benjamin L King
Babak Parvizi
Brian P Brunk
Christian J Stoeckert
John Quackenbush
Joel Richardson
Carol J Bult

Funding

MOLECULAR PATHOGENESIS OF CHROMOSOME 16 INVERSION INHUMAN LEUKEMIAZ01HG000030 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI LIU, PU PAUL · 1995 to 2008
$2.5M
Intramural NIH HHS Z01 HG000030NHGRI NIH HHS HG0030-P1
6 · The paper itself

Abstract

Databases of experimentally generated and computationally derived transcript sequences are valuable resources for genome analysis and annotation. The utility of such databases is enhanced when the sequences they contain are integrated with such biological information as genomic location, gene function, gene expression and phenotypic variation. We present the analysis and results of a semi-automated process of connecting transcript assemblies with highly curated biological information for mouse genes that is available through the Mouse Genome Informatics (MGI) database.

Indexed as

Databases, Nucleic AcidGenomeTranscription, GeneticAnimalsComputational BiologyMice

Identifiers

PMID12620126
PMCPMC151306

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.