ArticleGenome biology2003
Characterizing the stress/defense transcriptome of Arabidopsis.
Article in Genome biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.
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Who cites it
66 citing papers in PubMed.
- Lactuca super-pangenome provides insights into lettuce genome evolution and domestication.Nature communications · 2025Article
- Ozone control as a novel method to improve health-promoting bioactive compounds in red leaf lettuce (Frontiers in plant science · 2022Article
- Regulation of a Cytochrome P450 GenePlant physiology · 2020Article
- Functional characterisation of the transcriptome from leaf tissue of the fluoroacetate-producing plant, Dichapetalum cymosum, in response to mechanical wounding.Scientific reports · 2020Article
- Genome-wide characterization of the WRKY gene family in cultivated strawberry (Fragaria × ananassa Duch.) and the importance of several group III members in continuous cropping.Scientific reports · 2019Article
- Unintended effects of transgenic rice revealed by transcriptome and metabolism.GM crops & food · 2019Article
- Exploring transcription factors reveals crucial members and regulatory networks involved in different abiotic stresses in Brassica napus L.BMC plant biology · 2018Article
- Identification, Expression, and Functional Analysis of the Group IId WRKY Subfamily in Upland Cotton (Frontiers in plant science · 2018Article
- Identification of differentially expressed genes in oral squamous cell carcinoma TCA8113 cells.Oncology letters · 2017Article
- Suppression Substractive Hybridization and NGS Reveal Differential Transcriptome Expression Profiles in Wayfaring Tree (Viburnum lantana L.) Treated with Ozone.Frontiers in plant science · 2016Article
- Distinct transcriptional profiles of ozone stress in soybean (Glycine max) flowers and pods.BMC plant biology · 2014Article
- Specificity in ROS signaling and transcript signatures.Antioxidants & redox signaling · 2014Article
- Maize IgE binding proteins: each plant a different profile?Proteome science · 2014Article
- Genome and transcriptome analysis of the grapevine (Vitis vinifera L.) WRKY gene family.Horticulture research · 2014Article
- Transcriptional and metabolic signatures of Arabidopsis responses to chewing damage by an insect herbivore and bacterial infection and the consequences of their interaction.Frontiers in plant science · 2014Article
- The interaction of the novel 30C02 cyst nematode effector protein with a plant β-1,3-endoglucanase may suppress host defence to promote parasitism.Journal of experimental botany · 2012Article
- Article
- Putative resistance gene markers associated with quantitative trait loci for fire blight resistance in Malus 'Robusta 5' accessions.BMC genetics · 2012Article
- Differential transcript accumulation in chickpea during early phases of compatible interaction with a necrotrophic fungus Ascochyta rabiei.Molecular biology reports · 2012Article
- microRNAs responsive to ozone-induced oxidative stress in Arabidopsis thaliana.Plant signaling & behavior · 2012Article
6 more citing papers are in PubMed but not listed here.
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundTo understand the gene networks that underlie plant stress and defense responses, it is necessary to identify and characterize the genes that respond both initially and as the physiological response to the stress or pathogen develops. We used PCR-based suppression subtractive hybridization to identify Arabidopsis genes that are differentially expressed in response to ozone, bacterial and oomycete pathogens and the signaling molecules salicylic acid (SA) and jasmonic acid.
resultsWe identified a total of 1,058 differentially expressed genes from eight stress cDNA libraries. Digital northern analysis revealed that 55% of the stress-inducible genes are rarely transcribed in unstressed plants and 17% of them were not previously represented in Arabidopsis expressed sequence tag databases. More than two-thirds of the genes in the stress cDNA collection have not been identified in previous studies as stress/defense response genes. Several stress-responsive cis-elements showed a statistically significant over-representation in the promoters of the genes in the stress cDNA collection. These include W- and G-boxes, the SA-inducible element, the abscisic acid response element and the TGA motif.
conclusionsThe stress cDNA collection comprises a broad repertoire of stress-responsive genes encoding proteins that are involved in both the initial and subsequent stages of the physiological response to abiotic stress and pathogens. This set of stress-, pathogen- and hormone-modulated genes is an important resource for understanding the genetic interactions underlying stress signaling and responses and may contribute to the characterization of the stress transcriptome through the construction of standardized specialized arrays.
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