Evidence map›Paper›PMID 12620092›Full record

ArticleThe Biochemical journal2003

Identification of a novel mannose-capped lipoarabinomannan from Amycolatopsis sulphurea.

Kevin J C Gibson, Martine Gilleron, Patricia Constant, Germain Puzo, Jérôme Nigou, Gurdyal S Besra

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Surfactants tailored by the class Actinobacteria.Frontiers in microbiology · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kevin J C GibsonDepartment of Microbiology and Immunology, University of Newcastle, Newcastle-upon-Tyne NE2 4HH, UK.
Martine Gilleron
Patricia Constant
Germain Puzo
Jérôme Nigou
Gurdyal S Besra
Centre National de la Recherche Scientifique · FRInstitut de Pharmacologie et de Biologie Structurale · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genus Amycolatopsis is a member of the phylogenetic group nocardioform actinomycetes, which also includes the genus Mycobacterium. Members of this group have a characteristic cell envelope structure, dominated by various complex lipids and polysaccharides. Amongst these, lipoglycans are of particular interest since mycobacterial lipoarabinomannans are important immunomodulatory molecules. In this study we report the isolation and structural characterization of Amycolatopsis sulphurea lipoarabinomannan, designated AsuLAM. SDS/PAGE analysis revealed that AsuLAM was of an intermediate size between Mycobacterium tuberculosis lipoarabinomannan and lipomannan, confirmed by matrix-assisted laser-desorption ionization-time-of-flight mass spectrometry that predicted an average molecular mass of 10 kDa. Using a range of chemical degradations, NMR experiments and capillary electrophoresis analysis, AsuLAM was revealed as an original structure. The mannosyl-phosphatidyl- myo -inositol anchor exhibits a single acyl-form, characterized by a diacylated glycerol moiety, and contains, as one of the main fatty acids, 14-methyl-pentadecanoate, a characteristic fatty acid of the Amycolatopsis genus. AsuLAM also contains a short mannan domain; and is dominated by a multi-branched arabinan domain, composed of an (alpha1-->5)-Ara f (arabinofuranose) chain substituted, predominately at the O -2 position, by a single beta-Ara f. The arabinan domain is further elaborated by manno-oligosaccharide caps, with around one per molecule. This is the first description of manno-oligosaccharide caps found in a non-mycobacterial LAM. AsuLAM was unable to induce the production of the pro-inflammatory cytokine tumour necrosis factor alpha when tested with human or murine macrophage cell lines, reinforcing the paradigm that mannose-capped LAM are poor inducers of pro-inflammatory cytokines.

Indexed as

ActinomycetalesAnimalsCarbohydrate SequenceCell LineElectrophoresis, CapillaryElectrophoresis, Polyacrylamide GelHumansLipopolysaccharidesMacrophagesMannoseMiceMolecular Sequence DataMycobacteriumNuclear Magnetic Resonance, BiomolecularPhosphatidylinositolsPolysaccharides1-aminopyrene-3,6,8-trisulfonic acidarabanlipoarabinomannanLipopolysaccharidesMannosePhosphatidylinositolsPolysaccharidesPyrenesTumor Necrosis Factor-alpha

Identifiers

PMID12620092
PMCPMC1223432
OpenAlexW2027847669

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.