Evidence map›Paper›PMID 12618446›Full record

ArticleJournal of bacteriology2003

tmRNA in Caulobacter crescentus is cell cycle regulated by temporally controlled transcription and RNA degradation.

Kenneth C Keiler, Lucy Shapiro

Abstract read
In one paragraph

Article in Journal of bacteriology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Cooperative and Independent Functionality of tmRNA and SmpB inInternational journal of molecular sciences · 2025
    Article
  3. Article
  4. Article
  5. Regulated Proteolysis in Bacteria: Caulobacter.Annual review of genetics · 2016
    Review
  6. Mechanisms of ribosome rescue in bacteria.Nature reviews. Microbiology · 2015
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. The tmRNA ribosome-rescue system.Advances in protein chemistry and structural biology · 2012
    Review
  12. Review
  13. Article
  14. RNA localization in bacteria.Current opinion in microbiology · 2011
    Review
  15. Getting in the loop: regulation of development in Caulobacter crescentus.Microbiology and molecular biology reviews : MMBR · 2010
    Review
  16. Article
  17. Subcellular localization of a bacterial regulatory RNA.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Kenneth C KeilerDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA. kkeiler@psu.edu
Lucy Shapiro
Pennsylvania State University · USStanford University · US

Funding

REGULATION OF DIFFERENTIATION IN CAULOBACTERR01GM032506 · NIGMS · YESHIVA UNIVERSITY · PI SHAPIRO, LUCILLE · 1985 to 2014
$7.1M
DEVELOPMENT CONTROL OF DNA REPLICATION IN CAULOBACTERR01GM051426 · NIGMS · STANFORD UNIVERSITY · PI SHAPIRO, LUCILLE · 1994 to 2013
$3.8M
REGULATION OF DIFFERENTIATION IN CAULOBACTERR37GM032506 · NIGMS · STANFORD UNIVERSITY · PI SHAPIRO, LUCILLE · 1993 to 2002
$1.4M
NIGMS NIH HHS GM32506/5120 M2NIGMS NIH HHS GM51426NIGMS NIH HHS R01 GM032506NIGMS NIH HHS R01 GM051426NIGMS NIH HHS R37 GM032506
6 · The paper itself

Abstract

SsrA, or tmRNA, is a small RNA found in all bacteria that intervenes in selected translation reactions to target the nascent polypeptide for rapid proteolysis. We have found that the abundance of SsrA RNA in Caulobacter crescentus is regulated with respect to the cell cycle. SsrA RNA abundance increases in late G(1) phase, peaks during the G(1)-S transition, and declines in early S phase, in keeping with the reported role for SsrA in the timing of DNA replication initiation. Cell cycle regulation of SsrA RNA is accomplished by a combination of temporally controlled transcription and regulated RNA degradation. Transcription from the ssrA promoter peaks late in G(1), just before the peak in SsrA RNA abundance. SsrA RNA is stable in G(1)-phase cells and late S-phase cells but is degraded with a half-life of 4 to 5 min at the onset of S phase. This degradation is surprising, since SsrA RNA is both highly structured and highly abundant. This is the first observation of a structural RNA that is cell cycle regulated.

Indexed as

Cell CycleGene Expression Regulation, BacterialTranscription, GeneticCaulobacter crescentusPromoter Regions, GeneticRNA, BacterialRNA, MessengerRNA, TransferRNA, BacterialRNA, MessengerRNA, TransfertmRNA

Identifiers

PMID12618446
PMCPMC150134
OpenAlexW2157589115

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.