Evidence map›Paper›PMID 12618444›Full record

ArticleJournal of bacteriology2003

Purification and in vitro characterization of the Serratia marcescens NucC protein, a zinc-binding transcription factor homologous to P2 Ogr.

Victor McAlister, Chao Zou, Robert H Winslow, Gail E Christie

Open access · hybridAbstract read
In one paragraph

Article in Journal of bacteriology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Victor McAlisterDepartment of Microbiology and Immunology, Virginia Commonwealth University, Richmond, Virginia, USA.
Chao Zou
Robert H Winslow
Gail E Christie
Virginia Commonwealth University · US

Funding

MARC FELLOWSHIP FOR TRAINING IN MOLECULAR PARASITOLOGYF31GM017594 · NIGMS · VIRGINIA COMMONWEALTH UNIVERSITY · PI MC ALISTER, VICTOR J · 1995 to 2000
$8k
NIGMS NIH HHS F31 GM017594NIGMS NIH HHS F31 GM17594NIGMS NIH HHS R01GM52052
6 · The paper itself

Abstract

NucC is structurally and functionally homologous to a family of prokaryotic zinc finger transcription factors required for late gene expression in P2- and P4-related bacteriophages. Characterization of these proteins in vitro has been hampered by their relative insolubility and tendency to aggregate. We report here the successful purification of soluble, active, wild-type NucC protein. Purified NucC exhibits site-specific binding to a conserved DNA sequence that is located upstream of NucC-dependent Serratia marcescens promoters and the late promoters of P2-related phages. This sequence is sufficient for binding of NucC in vitro. NucC binding to the S. marcescens nuclease promoter P(nucA) and to the sequence upstream of the P2 late promoter P(F) is accompanied by DNA bending. NucC protects about 25 nucleotides of the P(F) upstream region from DNase I digestion, and RNA polymerase protects the promoter region only in the presence of NucC. Template DNA, RNA polymerase holoenzyme, and purified NucC are the only macromolecular components required for transcription from P(F) in vitro.

Indexed as

Bacterial ProteinsCarrier ProteinsTranscription FactorsBase SequenceBinding SitesDNA, BacterialDNA-Directed RNA PolymerasesDNA FootprintingMolecular Sequence DataProtein BiosynthesisSerratia marcescensTranscription, GeneticViral ProteinsBacterial ProteinsCarrier ProteinsDNA, BacterialDNA-Directed RNA Polymerasesogr protein, Enterobacteria phage P2Transcription FactorsViral Proteinszinc-binding protein

Identifiers

PMID12618444
PMCPMC150115
OpenAlexW2116731188

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.