Evidence map›Paper›PMID 12618401›Full record

ArticleGenetics2003

The promoter of the heterochromatic Drosophila telomeric retrotransposon, HeT-A, is active when moved into euchromatic locations.

Janet A George, Mary-Lou Pardue

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

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  20. Two retrotransposons maintain telomeres in Drosophila.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2005
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Janet A GeorgeDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Mary-Lou Pardue
Massachusetts Institute of Technology · US

Funding

HET-A, A RETROPOSON WITH A ROLE IN CHROMOSOME STRUCTURER01GM050315 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI PARDUE, MARY-LOU · 1995 to 2006
$2.3M
PROTEINS OF TELOMERE RETROTRANSPOSABLE ELEMENTSR01GM057006 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI PARDUE, MARY-LOU · 1998 to 2001
$403k
An Evolutionary Link Between Telomeres and TransposonsR56GM050315 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI PARDUE, MARY-LOU · 2008 to 2008
$399k
NIGMS NIH HHS GM-50315NIGMS NIH HHS GM-57006
6 · The paper itself

Abstract

The Drosophila telomeric retrotransposon, HeT-A, is found only in heterochromatin; therefore, its promoter must function in this chromatin environment. Studies of position effect variegation suggest that promoters of heterochromatic genes are very different from euchromatic promoters, but this idea has not been tested with isolated promoter sequences. The HeT-A promoter is the first heterochromatin promoter to be isolated and it is of interest to investigate its activity when removed from telomeric heterochromatin. This promoter was initially characterized by testing reporter constructs in transient transfection of cultured cells, an environment that may approximate its endogenous heterochromatin. We now report P-element-mediated transpositions of these constructs, testing the function of different parts of the putative promoter in euchromatin. Expression of endogenous HeT-A RNA shows marked developmental regulation and accumulates preferentially in replicating diploid tissues. HeT-A promoter constructs are active in all euchromatic locations tested and some display aspects of endogenous HeT-A stage- and cell-type expression programs. The activity of each promoter construct in euchromatic locations is also generally consistent with its activity in the transient transfection tests; a possibly significant exception is one sequence segment that appreciably enhanced activity in transient transfection but repressed promoter activity in euchromatin.

Indexed as

EuchromatinHeterochromatinPromoter Regions, GeneticRetroelementsAnimalsATP-Binding Cassette TransportersDrosophilaDrosophila ProteinsEye ProteinsGenes, ReporterATP-Binding Cassette TransportersDrosophila ProteinsEuchromatinEye ProteinsHeterochromatinRetroelementsw protein, Drosophila

Identifiers

PMID12618401
PMCPMC1462444
OpenAlexW2099596691

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.