Evidence map›Paper›PMID 12618400›Full record

ArticleGenetics2003

Knockout targeting of the Drosophila nap1 gene and examination of DNA repair tracts in the recombination products.

Susanne Lankenau, Thorsten Barnickel, Joachim Marhold, Frank Lyko, Bernard M Mechler, Dirk-Henner Lankenau

Abstract read
In one paragraph

Article in Genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Histone Chaperones as Cardinal Players in Development.Frontiers in cell and developmental biology · 2022
    Review
  5. Article
  6. Structural Characterization ofMolecules (Basel, Switzerland) · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Lung vascular cell heterogeneity: endothelium, smooth muscle, and fibroblasts.Proceedings of the American Thoracic Society · 2008
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Susanne LankenauDepartment of Zoology, University of Heidelberg, D-69120 Heidelberg, Germany.
Thorsten Barnickel
Joachim Marhold
Frank Lyko
Bernard M Mechler
Dirk-Henner Lankenau

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We used ends-in gene targeting to generate knockout mutations of the nucleosome assembly protein 1 (Nap1) gene in Drosophila melanogaster. Three independent targeted null-knockout mutations were produced. No wild-type NAP1 protein could be detected in protein extracts. Homozygous Nap1(KO) knockout flies were either embryonic lethal or poorly viable adult escapers. Three additional targeted recombination products were viable. To gain insight into the underlying molecular processes we examined conversion tracts in the recombination products. In nearly all cases the I-SceI endonuclease site of the donor vector was replaced by the wild-type Nap1 sequence. This indicated exonuclease processing at the site of the double-strand break (DSB), followed by replicative repair at donor-target junctions. The targeting products are best interpreted either by the classical DSB repair model or by the break-induced recombination (BIR) model. Synthesis-dependent strand annealing (SDSA), which is another important recombinational repair pathway in the germline, does not explain ends-in targeting products. We conclude that this example of gene targeting at the Nap1 locus provides added support for the efficiency of this method and its usefulness in targeting any arbitrary locus in the Drosophila genome.

Indexed as

AnimalsCell Cycle ProteinsDNA RepairDrosophila melanogasterDrosophila ProteinsGenes, LethalGene TargetingNuclear ProteinsNucleosome Assembly Protein 1ProteinsCell Cycle ProteinsDrosophila ProteinsNap1 protein, DrosophilaNuclear ProteinsNucleosome Assembly Protein 1Proteins

Identifiers

PMID12618400
PMCPMC1462439

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.