ArticleGenome research2003
The development of a highly informative mouse Simple Sequence Length Polymorphism (SSLP) marker set and construction of a mouse family tree using parsimony analysis.
Article in Genome research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Article
- BRG1 interacts with SOX10 to establish the melanocyte lineage and to promote differentiation.Nucleic acids research · 2017Article
- Effects of Cdh23 single nucleotide substitutions on age-related hearing loss in C57BL/6 and 129S1/Sv mice and comparisons with congenic strains.Scientific reports · 2017Article
- Modelling T cell proliferation: Dynamics heterogeneity depending on cell differentiation, age, and genetic background.PLoS computational biology · 2017Article
- Incorrect strain information for mouse cell lines: sequential influence of misidentification on sublines.In vitro cellular & developmental biology. Animal · 2017Article
- A Chromosome 17 Locus Engenders Frequency-Specific Non-Progressive Hearing Loss that Contributes to Age-Related Hearing Loss in Mice.Journal of the Association for Research in Otolaryngology : JARO · 2015Article
- Validation of simple sequence length polymorphism regions of commonly used mouse strains for marker assisted speed congenics screening.International journal of genomics · 2015Article
- Macronutrient selection by seven inbred mouse strains and three taste-related knockout strains.Physiology & behavior · 2014Article
- Mouse cell line authentication.Cytotechnology · 2014Article
- Taste dysfunction in BTBR mice due to a mutation of Itpr3, the inositol triphosphate receptor 3 gene.Physiological genomics · 2013Article
- QTL analysis of dietary obesity in C57BL/6byj X 129P3/J F2 mice: diet- and sex-dependent effects.PloS one · 2013Article
- Macronutrient choice of BTBR.NZW mice congenic for a 21-gene region of chromosome 17.Physiology & behavior · 2012Article
- Corpus callosum and experimental stroke: studies in callosotomized rats and acallosal mice.Stroke · 2011Article
- Density and function of central serotonin (5-HT) transporters, 5-HT1A and 5-HT2A receptors, and effects of their targeting on BTBR T+tf/J mouse social behavior.Journal of neurochemistry · 2011Article
- Identification of susceptibility loci in a mouse model of KRASG12D-driven pancreatic cancer.Cancer research · 2010Article
- Phenotype and genetics of progressive sensorineural hearing loss (Snhl1) in the LXS set of recombinant inbred strains of mice.PloS one · 2010Article
- Postnatal lesion evidence against a primary role for the corpus callosum in mouse sociability.The European journal of neuroscience · 2009Article
- Calcium taste preferences: genetic analysis and genome screen of C57BL/6J x PWK/PhJ hybrid mice.Genes, brain, and behavior · 2008Article
- Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences.BMC genomics · 2008Article
- Genetic loci affecting body weight and fatness in a C57BL/6J x PWK/PhJ mouse intercross.Mammalian genome : official journal of the International Mammalian Genome Society · 2007Article
Corrections and comments
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Authors and funding
15 authors.
Funding
Abstract
To identify highly informative markers for a large number of commonly employed murine crosses, we selected a subset of the extant mouse simple sequence length polymorphism (SSLP) marker set for further development. Primer pairs for 314 SSLP markers were designed and typed against 54 inbred mouse strains. We designed new PCR primer sequences for the markers selected for multiplexing using the fluorescent dyes FAM, VIC, NED, and ROX. The number of informative markers for C57BL/6J x DBA/2J is 217, with an average spacing of 6.8 centiMorgans (cM). For all other pairs of strains, the mean number of informative markers per cross is 197.0 (SD 37.8) with a mean distance between markers of 6.8 cM (SD 1.1). To confirm map positions of the 224 markers in our set that are polymorphic between Mus musculus and Mus spretus, we used The Jackson Laboratory (TJL) interspecific backcross mapping panel (TJL BSS); 168 (75%) of these markers had not been previously mapped in this cross by other investigators, adding new information to this community map resource. With this large data set, we sought to reconstruct a phylogenetic history of the laboratory mouse using Wagner parsimony analysis. Our results are largely congruent with the known history of inbred mouse strains.
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