Evidence map›Paper›PMID 12612077›Full record

ArticleMolecular and cellular biology2003

Intersection of the Kap123p-mediated nuclear import and ribosome export pathways.

Y Sydorskyy, D J Dilworth, E C Yi, D R Goodlett, R W Wozniak, J D Aitchison

Open access · greenAbstract readComparative Study
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
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  4. Karyopherin-mediated nucleocytoplasmic transport.Nature reviews. Molecular cell biology · 2022
    Review
  5. Eukaryotic Ribosome assembly and Nucleocytoplasmic Transport.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Y SydorskyyInstitute for Systems Biology, 1441 N 34th Street, Seattle, Washington 98105, USA.
D J Dilworth
E C Yi
D R Goodlett
R W Wozniak
J D Aitchison
Institute for Systems Biology · USUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kap123p is a yeast beta-karyopherin that imports ribosomal proteins into the nucleus prior to their assembly into preribosomal particles. Surprisingly, Kap123p is not essential for growth, under normal conditions. To further explore the role of Kap123p in nucleocytoplasmic transport and ribosome biogenesis, we performed a synthetic fitness screen designed to identify genes that interact with KAP123. Through this analysis we have identified three other karyopherins, Pse1p/Kap121p, Sxm1p/Kap108p, and Nmd5p/Kap119p. We propose that, in the absence of Kap123p, these karyopherins are able to supplant Kap123p's role in import. In addition to the karyopherins, we identified Rai1p, a protein previously implicated in rRNA processing. Rai1p is also not essential, but deletion of the RAI1 gene is deleterious to cell growth and causes defects in rRNA processing, which leads to an imbalance of the 60S/40S ratio and the accumulation of halfmers, 40S subunits assembled on polysomes that are unable to form functional ribosomes. Rai1p localizes predominantly to the nucleus, where it physically interacts with Rat1p and pre-60S ribosomal subunits. Analysis of the rai1/kap123 double mutant strain suggests that the observed genetic interaction results from an inability to efficiently export pre-60S subunits from the nucleus, which arises from a combination of compromised Kap123p-mediated nuclear import of the essential 60S ribosomal subunit export factor, Nmd3p, and a DeltaRAI1-induced decrease in the overall biogenesis efficiency.

Indexed as

Membrane Transport ProteinsActive Transport, Cell NucleusAllelesbeta KaryopherinsCarrier ProteinsCell NucleusExoribonucleasesKaryopherinsNuclear ProteinsReceptors, Cytoplasmic and NuclearRibosomesRNA-Binding ProteinsRNA, FungalRNA PrecursorsSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteinsbeta KaryopherinsCarrier ProteinsExoribonucleasesKap123 protein, S cerevisiaeKaryopherinsMembrane Transport ProteinsNMD3 protein, S cerevisiaeNMD5 protein, S cerevisiaeNuclear ProteinsPSE1 protein, S cerevisiaeRai1 protein, S cerevisiaeRAT1 protein, S cerevisiaeReceptors, Cytoplasmic and NuclearRNA-Binding ProteinsRNA, FungalRNA PrecursorsSaccharomyces cerevisiae ProteinsSXM1 protein, S cerevisiae

Identifiers

PMID12612077
PMCPMC149464
OpenAlexW2139789225

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.