Evidence map›Paper›PMID 12604787›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Origin and evolution of circadian clock genes in prokaryotes.

Volodymyr Dvornyk, Oxana Vinogradova, Eviatar Nevo

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 271 citations in OpenAlex.

  1. Review
  2. Article
  3. The Phenotypic Landscape of a Circadian Clock.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Review
  6. Mutations in the circadian cycle drive adaptive plasticity in cyanobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Ecosystem relocation on Snowball Earth: Polar-alpine ancestry of the extant surface biosphere?Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. The cyanobacterial circadian clock.Npj biological timing and sleep · 2025
    Review
  12. Review
  13. Frontiers in cell and developmental biology · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. The inner workings of an ancient biological clock.Trends in biochemical sciences · 2024
    Review
  18. Review
  19. Article
  20. Molecular clocks, satellite cells, and skeletal muscle regeneration.American journal of physiology. Cell physiology · 2023
    Review

50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Volodymyr DvornykInstitute of Evolution, University of Haifa, Mount Carmel, Haifa 31905, Israel.
Oxana Vinogradova
Eviatar Nevo
M.G. Kholodny Institute of Botany · UANational Academy of Sciences of Ukraine · UAUniversity of Haifa · IL

Funding

CHARACTERIZATION OF DELETERIOUS GENOMIC MUTATIONSR01GM060402 · NIGMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2000 to 2005
$889k
NIGMS NIH HHS R01 GM060402NIGMS NIH HHS R01 GM60402-O1A1
6 · The paper itself

Abstract

Regulation of physiological functions with approximate daily periodicity, or circadian rhythms, is a characteristic feature of eukaryotes. Until recently, cyanobacteria were the only prokaryotes reported to possess circadian rhythmicity. It is controlled by a cluster of three genes: kaiA, kaiB, and kaiC. Using sequence data of approximately 70 complete prokaryotic genomes from the various public depositories, we show here that the kai genes and their homologs have quite a different evolutionary history and occur in Archaea and Proteobacteria as well. Among the three genes, kaiC is evolutionarily the oldest, and kaiA is the youngest and likely evolved only in cyanobacteria. Our data suggest that the prokaryotic circadian pacemakers have evolved in parallel with the geological history of the earth, and that natural selection, multiple lateral transfers, and gene duplications and losses have been the major factors shaping their evolution.

Indexed as

Circadian RhythmEvolution, MolecularBacterial ProteinsBiological ClocksCircadian Rhythm Signaling Peptides and ProteinsCyanobacteriaGene Expression Regulation, BacterialPhylogenyPolymorphism, GeneticTime FactorsBacterial ProteinsCircadian Rhythm Signaling Peptides and ProteinsKaiA protein, cyanobacteriaKaiB protein, cyanobacteriaKaiC protein, cyanobacteria

Identifiers

PMID12604787
PMCPMC151369
OpenAlexW2074937753

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.