Evidence map›Paper›PMID 12604779›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Transcriptional analysis of the B cell germinal center reaction.

Ulf Klein, Yuhai Tu, Gustavo A Stolovitzky, Jeffrey L Keller, Joseph Haddad, Vladan Miljkovic, Giorgio Cattoretti, Andrea Califano, Riccardo Dalla-Favera

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 197 papers.

0numbers the graph read from it
0cells of the map it votes in
197citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

197 citing papers in PubMed, 400 citations in OpenAlex.

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  8. Observational
  9. Aberrant METTL1-mediated tRNA mNature communications · 2024
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  13. Type III interferon drives thymic B cell activation and regulatory T cell generation.Proceedings of the National Academy of Sciences of the United States of America · 2023
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137 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ulf KleinInstitute for Cancer Genetics and Department of Pathology, Columbia University, New York, NY 10032, USA.
Yuhai Tu
Gustavo A Stolovitzky
Jeffrey L Keller
Joseph Haddad
Vladan Miljkovic
Giorgio Cattoretti
Andrea Califano
Riccardo Dalla-Favera
Cancer Genetics (United States) · USPenn Presbyterian Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The germinal center (GC) reaction is crucial for T cell-dependent immune responses and is targeted by B cell lymphomagenesis. Here we analyzed the transcriptional changes that occur in B cells during GC transit (naive B cells --> centroblasts --> centrocytes --> memory B cells) by gene expression profiling. Naive B cells, characterized by the expression of cell cycle-inhibitory and antiapoptotic genes, become centroblasts by inducing an atypical proliferation program lacking c-Myc expression, switching to a proapoptotic program, and down-regulating cytokine, chemokine, and adhesion receptors. The transition from GC to memory cells is characterized by a return to a phenotype similar to that of naive cells except for an apoptotic program primed for both death and survival and for changes in the expression of cell surface receptors including IL-2 receptor beta. These results provide insights into the dynamics of the GC reaction and represent the basis for the analysis of B cell malignancies.

Indexed as

Gene Expression RegulationGerminal CenterTranscription, GeneticApoptosisB-LymphocytesCell AdhesionCell DivisionCell SeparationDown-RegulationFlow CytometryHumansImmunohistochemistryImmunologic MemoryInterleukin-2 Receptor beta SubunitMagneticsOligonucleotide Array Sequence AnalysisIL2RB protein, humanInterleukin-2 Receptor beta SubunitProto-Oncogene Proteins c-mycReceptors, Interleukin

Identifiers

PMID12604779
PMCPMC151393
OpenAlexW2172230584

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.