Evidence map›Paper›PMID 12600943›Full record

ArticleGenes & development2003

SWI/SNF-dependent chromatin remodeling of RNR3 requires TAF(II)s and the general transcription machinery.

Vishva Mitra Sharma, Bing Li, Joseph C Reese

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 79 citations in OpenAlex.

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  17. The Mediator complex: a central integrator of transcription.Nature reviews. Molecular cell biology · 2015
    Review
  18. Direct interactions promote eviction of the Sir3 heterochromatin protein by the SWI/SNF chromatin remodeling enzyme.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Vishva Mitra SharmaDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, USA.
Bing Li
Joseph C Reese
Pennsylvania State University · US

Funding

REGULATION OF DNA DAMAGE INDUCED GENES BY YEAST TAFIISR01GM058672 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI REESE, JOSEPH C · 1999 to 2019
$6.5M
NIGMS NIH HHS GM58672NIGMS NIH HHS R01 GM058672
6 · The paper itself

Abstract

Gene expression requires the recruitment of chromatin remodeling activities and general transcription factors (GTFs) to promoters. Whereas the role of activators in recruiting chromatin remodeling activities has been clearly demonstrated, the contributions of the transcription machinery have not been firmly established. Here we demonstrate that the remodeling of the RNR3 promoter requires a number of GTFs, mediator and RNA polymerase II. We also show that remodeling is dependent upon the SWI/SNF complex, and that TFIID and RNA polymerase II are required for its recruitment to the promoter. In contrast, Gcn5p-dependent histone acetylation occurs independently of TFIID and RNA polymerase II function, and we provide evidence that acetylation increases the extent of nucleosome remodeling, but is not required for SWI/SNF recruitment. Thus, the general transcription machinery can contribute to nucleosome remodeling by mediating the association of SWI/SNF with promoters, thereby revealing a novel pathway for the recruitment of chromatin remodeling activities.

Indexed as

Drosophila ProteinsRNA-Binding ProteinsTranscription, GeneticAcetylationChromatinCyclin-Dependent KinasesDNA-Binding ProteinsFungal ProteinsHistonesMediator ComplexMutationNuclear ProteinsNucleosomesPromoter Regions, GeneticProtein KinasesRibonucleoprotein, U1 Small NuclearChromatinCyclin-Dependent KinasesDNA-Binding ProteinsDrosophila ProteinsFungal ProteinsHistonesKin28 protein kinase, S cerevisiaeMediator ComplexNuclear ProteinsNucleosomesNUT1 protein, S cerevisiaeProtein KinasesRibonucleoprotein, U1 Small NuclearRibonucleotide ReductasesRNA-Binding ProteinsRNA Polymerase IISaccharomyces cerevisiae Proteinssnf protein, DrosophilaSRB4 protein, S cerevisiaeTAF12 protein, humanTAF1 protein, S cerevisiaeTATA-Binding Protein Associated FactorsTranscription FactorsTranscription Factor TFIID

Identifiers

PMID12600943
PMCPMC195993
OpenAlexW2108086451

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.