Evidence map›Paper›PMID 12595565›Full record

ArticleNucleic acids research2003

RNA sequences that work as transcriptional activating regions.

Shamol Saha, Aseem Z Ansari, Kevin A Jarrell, Mark Ptashne, Kevin A Jarell

Erratum issuedAbstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Versatile RNA-sensing transcriptional regulators for engineering genetic networks.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  6. Tracking, tuning, and terminating microbial physiology using synthetic riboregulators.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  7. Roles for miRNA-378/378* in adipocyte gene expression and lipogenesis.American journal of physiology. Endocrinology and metabolism · 2010
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Riboactivators: transcription activation by noncoding RNA.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

  • Erratum issued
    Jarell KA [corrected to Jarrell KA]
5 · Who and what money

Authors and funding

5 authors.

Shamol SahaDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
Aseem Z Ansari
Kevin A Jarrell
Mark Ptashne
Kevin A Jarell

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe a set of RNA molecules that work as transcriptional activators when tethered to DNA. These RNA activating regions were found amongst a randomized set of molecules bearing variants of a 10 nt loop attached to an RNA stem. The various RNA activating regions all bear an identical five- residue sequence with an interspersed sixth residue. The result shows that although all natural activating regions characterized thus far are peptidic, this function can be served by other kinds of moieties as well.

Indexed as

Base SequenceBinding SitesMolecular Sequence DataNucleic Acid ConformationOligoribonucleotidesRNASaccharomyces cerevisiaeTranscriptional ActivationOligoribonucleotidesRNA

Identifiers

PMID12595565
PMCPMC149820

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.