Evidence map›Paper›PMID 12595451›Full record

ArticleInfection and immunity2003

Functional genomics approach to the identification of virulence genes involved in Edwardsiella tarda pathogenesis.

Putanae S Srinivasa Rao, Tit Meng Lim, Ka Yin Leung

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 115 citations in OpenAlex.

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  13. TheInfection and immunity · 2019
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  15. Characterization of a Highly VirulentFrontiers in microbiology · 2019
    Article
  16. A zebrafish model of infection-associated acute kidney injury.American journal of physiology. Renal physiology · 2018
    Article
  17. Article
  18. Article
  19. Review
  20. Temperature-Dependent Gene Expression inFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Putanae S Srinivasa RaoDepartment of Biological Sciences, Faculty of Science, National University of Singapore, Singapore 117543, Singapore.
Tit Meng Lim
Ka Yin Leung
National University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Edwardsiella tarda is an important cause of hemorrhagic septicemia in fish and also of gastro- and extraintestinal infections in humans. Here, we report the identification of 14 virulence genes of pathogenic E. tarda that are essential for disseminated infection, via a genome-wide analysis. We screened 490 alkaline phosphatase fusion mutants from a library of 450,000 TnphoA transconjugants derived from strain PPD130/91, using fish as an infection model. Compared to the wild type, 15 mutants showed significant decreases in virulence. Six mutants had insertions in the known virulence-related genes, namely, fimA, gadB, katB, pstS, pstC, and ssrB. Some mutants corresponded to known genes (astA, isor, and ompS2) that had not been previously shown to be involved in pathogenesis, and three had insertions in two novel genes. In vivo infection kinetics experiments confirmed the inability of these attenuated mutants to proliferate and cause fatal infection in fish. Screening for the presence of the above-described virulence genes in six virulent and seven avirulent strains of E. tarda indicated that seven of the genes were specific to pathogenic E. tarda. The genes identified here may be used to develop vaccines and diagnostic kits as well as for further studying the pathogenesis of E. tarda and other pathogenic bacteria.

Indexed as

Genome, BacterialAnimalsBacterial AdhesionBacterial Outer Membrane ProteinsBlotting, SouthernCloning, MolecularEdwardsiella tardaFishesLethal Dose 50MutationOperonVirulenceBacterial Outer Membrane Proteins

Identifiers

PMID12595451
PMCPMC148833
OpenAlexW2107872185

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.