Evidence map›Paper›PMID 12592387›Full record

ArticleOncogene2003

CHD5, a new member of the chromodomain gene family, is preferentially expressed in the nervous system.

Patricia M Thompson, Takahiro Gotoh, Marleen Kok, Peter S White, Garrett M Brodeur

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Oncogene, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 169 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Review
  5. Molecular Acrobats: How CHD Remodelers Shape the Genetic Playground to License Cell Identity.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  6. Article
  7. Article
  8. Evaluation ofInternational journal of fertility & sterility · 2024
    Article
  9. Article
  10. Pan-Cancer Analysis Identifies CHD5 as a Potential Biomarker for Glioma.International journal of molecular sciences · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Pathway analysis of smoking-induced changes in buccal mucosal gene expression.The Egyptian journal of medical human genetics · 2022
    Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. An overview of neuroblastoma cell lineage phenotypes andExperimental biology and medicine (Maywood, N.J.) · 2020
    Review
  20. Article

35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Patricia M ThompsonDivision of Oncology, the Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Takahiro Gotoh
Marleen Kok
Peter S White
Garrett M Brodeur
Children's Hospital of Philadelphia · USUniversity of Pennsylvania · US

Funding

MOLECULAR GENETIC ANALYSIS OF NEUROBLASTOMAR01CA039771 · NCI · WASHINGTON UNIVERSITY · PI BRODEUR, GARRETT M · 1985 to 2013
$4.2M
NCI NIH HHS CA-39771
6 · The paper itself

Abstract

Chromatin remodeling is one of the mechanisms by which gene expression is regulated developmentally. Chromatin structure is controlled at least in part by post-translational modification of histones, as well as by chromodomain proteins. We have identified a novel gene encoding a protein with chromatin remodeling, helicase and DNA-binding motifs. This gene, called CHD5, is the fifth member of the CHD gene family identified in humans. This gene is most homologous to CHD3 and CHD4, which encode proteins that are part of the nucleosome remodeling and histone deacetylation (NuRD) complex. CHD5 is preferentially expressed in total brain, fetal brain, and cerebellum. It is also moderately expressed in the adrenal gland, but expression is undetectable in almost all other tissues examined. CHD5 maps within a small region of deletion on 1p36.3 in human neuroblastomas, a common pediatric tumor. We examined a panel of neuroblastoma cell lines for CHD5 expression, which was consistently low or undetectable in all these lines. Expression was also examined in a panel of 137 primary neuroblastomas, and low expression was highly correlated with 1p deletion, MYCN amplification, advanced stage, and unfavorable histology. These findings suggest that this gene may play a role in the development of the nervous system, and it may also play a role in the pathogenesis of neural tumors.

Indexed as

DNA HelicasesAmino Acid SequenceChromosome DeletionChromosomes, Human, Pair 1ExonsGene AmplificationGenesGenes, mycHumansMolecular Sequence DataMultigene FamilyNeoplasm ProteinsNeoplasm StagingNerve Tissue ProteinsNeuroblastomaOrgan SpecificityCHD5 protein, humanDNA HelicasesNeoplasm ProteinsNerve Tissue ProteinsRNA, Messenger

Identifiers

PMID12592387
OpenAlexW2045554354

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.