Evidence map›Paper›PMID 12592034›Full record

ArticleProtein science : a publication of the Protein Society2003

Enhanced correction methods for hydrogen exchange-mass spectrometric studies of amyloid fibrils.

Indu Kheterpal, Ronald Wetzel, Kelsey D Cook

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Early-stage mapping of macromolecular content in APPFrontiers in aging neuroscience · 2023
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Mass spectrometry and the amyloid problem--how far can we go in the gas phase?Journal of the American Society for Mass Spectrometry · 2010
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Structural properties of Abeta protofibrils stabilized by a small molecule.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Indu KheterpalGraduate School of Medicine, University of Tennessee Medical Center, University of Tennessee, Knoxville, Tennessee 37996-1600, USA.
Ronald Wetzel
Kelsey D Cook
University of Tennessee at Knoxville · US

Funding

HYDROGEN EXCHANGE STUDIES ON A-BETA AMYLOID FIBRILSR01AG018927 · NIA · UNIVERSITY OF TENNESSEE KNOXVILLE · PI WETZEL, RONALD B · 2001 to 2005
$1.5M
NIA NIH HHS R01 AG018927NIA NIH HHS R01AG18927-01
6 · The paper itself

Abstract

We describe methods for minimization of and correction for artifactual forward and backward exchange occurring during hydrogen exchange-mass spectrometric (HX-MS) studies of amyloid fibrils of the Abeta(1-40) peptide. The quality of the corrected data obtained using published and new correction algorithms is evaluated quantitatively. Using the new correction methods, we have determined that 20.1 +/- 1.4 of the 39 backbone amide hydrogens in Abeta(1-40) exchange with deuteriums in 100 h when amyloid fibrils of this peptide are suspended in D(2)O. These data reinforce our previous conclusions based on uncorrected data that amyloid fibrils contain a rigid protective core structure that involves only about half of the Abeta backbone amides. The methods developed here should be of general value for HX-MS studies of amyloid fibrils and other protein aggregates.

Indexed as

Amyloid beta-PeptidesHumansHydrogenPeptide FragmentsProtein ConformationSpectrometry, Mass, Electrospray IonizationAmyloid beta-Peptidesamyloid beta-protein (1-40)HydrogenPeptide Fragments

Identifiers

PMID12592034
PMCPMC2312450
OpenAlexW2109792346

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.