Evidence map›Paper›PMID 12589039›Full record

ArticleMolecular biology of the cell2003

The AtC-VPS protein complex is localized to the tonoplast and the prevacuolar compartment in arabidopsis.

Enrique Rojo, Jan Zouhar, Valentina Kovaleva, Seho Hong, Natasha V Raikhel

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
  5. Article
  6. Review
  7. Emerging Mechanisms of Endocytosis inLife (Basel, Switzerland) · 2021
    Review
  8. Article
  9. Phosphoinositides control the localization of HOPS subunit VPS41, which together with VPS33 mediates vacuole fusion in plants.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  10. Functional diversification ofProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  11. Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  12. AtCAP2 is crucial for lytic vacuole biogenesis during germination by positively regulating vacuolar protein trafficking.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Review
  14. Article
  15. Tethering Complexes in the Arabidopsis Endomembrane System.Frontiers in cell and developmental biology · 2016
    Review
  16. Article
  17. Plant vacuole morphology and vacuolar trafficking.Frontiers in plant science · 2014
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Enrique RojoDepartment of Botany and Plant Sciences, University of California, Riverside 92521, USA.
Jan Zouhar
Valentina Kovaleva
Seho Hong
Natasha V Raikhel
University of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant cells contain several types of vacuoles with specialized functions. Although the biogenesis of these organelles is well understood at the morphological level, the machinery involved in plant vacuole formation is largely unknown. We have recently identified an Arabidopsis mutant, vcl1, that is deficient in vacuolar formation. VCL1 is homologous to a protein that regulates membrane fusion at the tonoplast in yeast. On the basis of these observations, VCL1 is predicted to play a direct role in vacuolar biogenesis and vesicular trafficking to the vacuole in plants. In this work, we show that VCL1 forms a complex with AtVPS11 and AtVPS33 in vivo. These two proteins are homologues of proteins that have a well-characterized role in membrane fusion at the tonoplast in yeast. VCL1, AtVPS11, and AtVPS33 are membrane-associated and cofractionate with tonoplast and denser endomembrane markers in subcellular fractionation experiments. Consistent with this, VCL1, AtVPS11, and AtVPS33 are found on the tonoplast and the prevacuolar compartment (PVC) by immunoelectron microscopy. We also show that a VCL1-containing complex includes SYP2-type syntaxins and is most likely involved in membrane fusion on both the PVC and tonoplast in vivo. VCL1, AtVPS11, and AtVPS33 are the first components of the vacuolar biogenesis machinery to be identified in plants.

Indexed as

ArabidopsisArabidopsis ProteinsCell MembraneCentrifugation, Density GradientElectrophoresis, Polyacrylamide GelGreen Fluorescent ProteinsLuminescent ProteinsMembrane ProteinsMicroscopy, ElectronMicroscopy, ImmunoelectronPhylogenyPrecipitin TestsProtein BindingQa-SNARE ProteinsSucroseVacuolesArabidopsis ProteinsGreen Fluorescent ProteinsLuminescent ProteinsMembrane ProteinsQa-SNARE ProteinsSucroseVCL1 protein, ArabidopsisVPS33 protein, Arabidopsis

Identifiers

PMID12589039
PMCPMC149977
OpenAlexW2117195423

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.