Evidence map›Paper›PMID 12588988›Full record

ArticleMolecular and cellular biology2003

The growth factor granulin interacts with cyclin T1 and modulates P-TEFb-dependent transcription.

Mainul Hoque, Tara M Young, Chee-Gun Lee, Ginette Serrero, Michael B Mathews, Tsafi Pe'ery

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 78 citations in OpenAlex.

  1. Pooled it
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  6. mCell proliferation · 2023
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  13. Histidine tracts in human transcription factors: insight into metal ion coordination ability.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Mainul HoqueDepartment of Biochemistry and Molecular Biology, New Jersey Medical School, University of Medicine and Dentistry of New Jersey, Newark, New Jersey 07013-1709, USA.
Tara M Young
Chee-Gun Lee
Ginette Serrero
Michael B Mathews
Tsafi Pe'ery
Rutgers, The State University of New Jersey · USRutgers New Jersey Medical SchoolUniversity of Maryland, Baltimore · US

Funding

REGULATION OF HIV1 GENE EXPRESSION BY TAT AND TARR01AI031802 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI MATHEWS, MICHAEL B · 1992 to 2001
$642k
NIAID NIH HHS AI 31802
6 · The paper itself

Abstract

Cyclin T1, together with the kinase CDK9, is a component of the transcription elongation factor P-TEFb which binds the human immunodeficiency virus type 1 (HIV-1) transactivator Tat. P-TEFb facilitates transcription by phosphorylating the carboxy-terminal domain (CTD) of RNA polymerase II. Cyclin T1 is an exceptionally large cyclin and is therefore a candidate for interactions with regulatory proteins. We identified granulin as a cyclin T1-interacting protein that represses expression from the HIV-1 promoter in transfected cells. The granulins, mitogenic growth factors containing repeats of a cysteine-rich motif, were reported previously to interact with Tat. We show that granulin formed stable complexes in vivo and in vitro with cyclin T1 and Tat. Granulin bound to the histidine-rich domain of cyclin T1, which was recently found to bind to the CTD, but not to cyclin T2. Binding of granulin to P-TEFb inhibited the phosphorylation of a CTD peptide. Granulin expression inhibited Tat transactivation, and tethering experiments showed that this effect was due, at least in part, to a direct action on cyclin T1 in the absence of Tat. In addition, granulin was a substrate for CDK9 but not for the other transcription-related kinases CDK7 and CDK8. Thus, granulin is a cellular protein that interacts with cyclin T1 to inhibit transcription.

Indexed as

Intercellular Signaling Peptides and Proteins3T3 CellsAmino Acid SequenceAnimalsBlotting, WesternCell LineCOS CellsCyclin-Dependent Kinase 8Cyclin-Dependent Kinase 9Cyclin-Dependent Kinase-Activating KinaseCyclin-Dependent KinasesCyclinsCyclin TDose-Response Relationship, DrugGene Products, tatGlutathione TransferaseCCNT1 protein, humanCcnt1 protein, mouseCDK8 protein, humanCDK9 protein, humanCdk9 protein, mouseCyclin-Dependent Kinase 8Cyclin-Dependent Kinase 9Cyclin-Dependent Kinase-Activating KinaseCyclin-Dependent KinasesCyclinsCyclin TGene Products, tatGlutathione TransferaseIntercellular Signaling Peptides and ProteinsPeptidesPositive Transcriptional Elongation Factor BProgranulinsProtein Serine-Threonine KinasesRecombinant Fusion ProteinsViral Proteins

Identifiers

PMID12588988
PMCPMC151712
OpenAlexW2048567613

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.