Evidence map›Paper›PMID 12586696›Full record

ArticleGenetics2003

The Rad27 (Fen-1) nuclease inhibits Ty1 mobility in Saccharomyces cerevisiae.

Anuradha Sundararajan, Bum-Soo Lee, David J Garfinkel

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Anuradha SundararajanGene Regulation and Chromosome Biology Laboratory, National Cancer Institute, Frederick, Maryland 21702, USA.
Bum-Soo Lee
David J Garfinkel
Frederick National Laboratory for Cancer Research · US

Funding

Ty Element Retrotransposition in S. cerevisiaeZ01BC010340 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GARFINKEL, DAVID J. · 2000 to 2008
$2.6M
Ty Element Retrotransposition in Saccharomyces cerevisiaeZIABC010340 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GARFINKEL, DAVID J. · 2009 to 2010
$1.5M
6 · The paper itself

Abstract

Although most Ty1 elements in Saccharomyces cerevisiae are competent for retrotransposition, host defense genes can inhibit different steps of the Ty1 life cycle. Here, we demonstrate that Rad27, a structure-specific nuclease that plays an important role in DNA replication and genome stability, inhibits Ty1 at a post-translational level. We have examined the effects of various rad27 mutations on Ty1 element retrotransposition and cDNA recombination, termed Ty1 mobility. The point mutations rad27-G67S, rad27-G240D, and rad27-E158D that cause defects in certain enzymatic activities in vitro result in variable increases in Ty1 mobility, ranging from 4- to 22-fold. The C-terminal frameshift mutation rad27-324 confers the maximum increase in Ty1 mobility (198-fold), unincorporated cDNA, and insertion at preferred target sites. The null mutation differs from the other rad27 alleles by increasing the frequency of multimeric Ty1 insertions and cDNA recombination with a genomic element. The rad27 mutants do not markedly alter the levels of Ty1 RNA or the TyA1-gag protein. However, there is an increase in the stability of unincorporated Ty1 cDNA in rad27-324 and the null mutant. Our results suggest that Rad27 inhibits Ty1 mobility by destabilizing unincorporated Ty1 cDNA and preventing the formation of Ty1 multimers.

Indexed as

RetroelementsSaccharomyces cerevisiae ProteinsEndodeoxyribonucleasesFlap EndonucleasesMutationRecombination, GeneticSaccharomyces cerevisiaeEndodeoxyribonucleasesFlap EndonucleasesRAD27 protein, S cerevisiaeRetroelementsSaccharomyces cerevisiae Proteins

Identifiers

PMID12586696
PMCPMC1462422
OpenAlexW2159508863

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.