Evidence map›Paper›PMID 12582249›Full record

ArticleNucleic acids research2003

Characterization of the human beta-globin downstream promoter region.

Kelly M Leach, Karen F Vieira, Sung-Hae Lee Kang, Ara Aslanian, Martin Teichmann, Robert G Roeder, Jörg Bungert

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Clinical applications of gene therapy for rare diseases: A review.International journal of experimental pathology · 2023
    Review
  4. Article
  5. TFII-I/Gtf2i and Erythro-Megakaryopoiesis.Frontiers in physiology · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Neutralizing the function of a β-globin-associated cis-regulatory DNA element using an artificial zinc finger DNA-binding domain.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Distinct modes of gene regulation by a cell-specific transcriptional activator.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Kelly M LeachCenter for Mammalian Genetics, Powell Gene Therapy Center, Department of Biochemistry and Molecular Biology, University of Florida College of Medicine, 1600 SW Archer Road, PO 100245, Gainesville, FL 32610, USA.
Karen F Vieira
Sung-Hae Lee Kang
Ara Aslanian
Martin Teichmann
Robert G Roeder
Jörg Bungert
Florida College · US

Funding

STRUCTURE/FUNCTION OF THE HUMAN B-GLOBIN LCRR01DK052356 · NIDDK · UNIVERSITY OF FLORIDA · PI BUNGERT, JORG · 1997 to 2017
$4.7M
NIDDK NIH HHS DK 52356NIDDK NIH HHS R01 DK052356
6 · The paper itself

Abstract

The human beta-globin gene is abundantly expressed specifically in adult erythroid cells. Stage-specific transcription is regulated principally by promoter proximal cis-regulatory elements. The basal promoter contains a non-canonical TATA-like motif as well as an initiator element. These two elements have been shown to interact with the TFII-D complex. Here we show that in addition to the TATA and initiator elements, conserved E-box motifs are located in the beta-globin downstream promoter. One of the E-box motifs overlaps the initiator and this composite element interacts with USF1 and TFII-I in vitro. Another E-box, located 60 bp 3' to the transcription initiation site, interacts with USF1 and USF2. Mutations of either the initiator or the downstream E-box impair transcription of the beta-globin gene in vitro. Mutations of a putative NF-E2-binding site in the downstream promoter region do not affect transcription in vitro. USF1, USF2, TFII-I and p45 can be crosslinked to a beta-globin promoter fragment in MEL cells in vivo, whereas only TFII-I and USF2 crosslink to the beta-globin gene in K562 cells. The summary data demonstrate that in addition to the well-characterized interactions of the TFII-D complex with the basal promoter, E-box motifs contribute to the efficient formation of transcription complexes on the adult beta-globin gene.

Indexed as

3T3 CellsAnimalsBase SequenceBinding SitesDNA-Binding ProteinsElectrophoretic Mobility Shift AssayErythroid-Specific DNA-Binding FactorsGlobinsHumansK562 CellsMiceModels, BiologicalMolecular Sequence DataMutationNF-E2 Transcription FactorNF-E2 Transcription Factor, p45 SubunitDNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsGlobinsGTF2I protein, humanGtf2i protein, mouseNFE2 protein, humanNfe2 protein, mouseNF-E2 Transcription FactorNF-E2 Transcription Factor, p45 SubunitTranscription FactorsTranscription Factors, TFIIUpstream Stimulatory FactorsUSF1 protein, humanUsf1 protein, mouseUSF2 protein, humanUsf2 protein, mouse

Identifiers

PMID12582249
PMCPMC150227
OpenAlexW2023553296

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.