Evidence map›Paper›PMID 12582132›Full record

ArticleEukaryotic cell2003

Transcriptional regulation of xyn2 in Hypocrea jecorina.

Elisabeth Würleitner, Licia Pera, Christian Wacenovsky, Angela Cziferszky, Susanne Zeilinger, Christian P Kubicek, Robert L Mach

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 66 citations in OpenAlex.

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  13. Influence ofApplied and environmental microbiology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Elisabeth WürleitnerMicrobial Biochemistry and Gene Technology Group, Institute of Chemical Engineering, A-1060 Vienna, Austria.
Licia Pera
Christian Wacenovsky
Angela Cziferszky
Susanne Zeilinger
Christian P Kubicek
Robert L Mach

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The xylanase system of the filamentous fungus Hypocrea jecorina (Trichoderma reesei) consists of two specific xylanases, Xyn1 and Xyn2, which are simultaneously expressed during growth on xylan but respond differentially to low-molecular-weight inducers. Using in vivo footprinting analysis of xylan-induced and noninduced mycelia, we detected two adjacent nucleotide sequences (5'-AGAA-3' on the noncoding strand and 5'-GGGTAAATTGG-3', referred to as the xylanase-activating element [XAE], on the coding strand, respectively) to bind proteins. Among these, binding to the AGAA-box is only observed under noninduced conditions, whereas binding to XAE is constitutive. Electrophoretic mobility shift assay with heterologously expressed components of the H. jecorina Hap2/3/5 protein complex and the cellulase regulator Ace2 suggests that these two transactivators form the protein complex binding to XAE. H. jecorina transformants, containing correspondingly mutated versions of the xyn2 promoter fused to the Aspergillus niger goxA gene as a reporter, revealed that the elimination of protein binding to the AGAA-box resulted in a threefold increase in both basal and induced transcription, whereas elimination of Ace2 binding to its target in XAE completely eliminated transcription under both conditions. Destruction of the CCAAT-box by insertion of a point mutation prevents binding of the Hap2/3/5 complex in vitro and results in a slight increase in both basal and induced transcription. These data support a model of xyn2 regulation based on the interplay of Hap2/3/5, Ace2 and the AGAA-box binding repressor.

Indexed as

Saccharomyces cerevisiae ProteinsArabidopsis ProteinsBase SequenceBinding SitesCCAAT-Binding FactorDisaccharidesDNA-Binding ProteinsFungal ProteinsGene Expression Regulation, EnzymologicGene Expression Regulation, FungalGenes, RegulatorGenetic VectorsGlucansHypocreaNucleotidesPoint MutationACE2 protein, S cerevisiaeArabidopsis ProteinsCCAAT-Binding FactorDisaccharidesDNA-Binding ProteinsFungal ProteinsGlucansHAP2 protein, Hypocrea jecorinaNucleotidesRepressor ProteinsSaccharomyces cerevisiae ProteinssophoroseTranscription FactorsXylansxylobioseXylosidasesXyn2 protein, Arabidopsis

Identifiers

PMID12582132
PMCPMC141161
OpenAlexW2159380198

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.