Evidence map›Paper›PMID 12582121›Full record

ArticleEukaryotic cell2003

Expressed sequence tag analysis of the human pathogen Paracoccidioides brasiliensis yeast phase: identification of putative homologues of Candida albicans virulence and pathogenicity genes.

Gustavo H Goldman, Everaldo dos Reis Marques, Diógenes Custódio Duarte Ribeiro, Luciano Angelo de Souza Bernardes, Andréa Carla Quiapin, Patrícia Marostica Vitorelli, Marcela Savoldi, Camile P Semighini, Regina C de Oliveira, Luiz R Nunes and 10 more

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 164 citations in OpenAlex.

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  14. Frontiers in microbiology · 2019
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  17. TheG3 (Bethesda, Md.) · 2018
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20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 2 countries.

Gustavo H GoldmanFaculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, São Paulo, Brazil. ggoldman@usp.br
Everaldo dos Reis Marques
Diógenes Custódio Duarte Ribeiro
Luciano Angelo de Souza Bernardes
Andréa Carla Quiapin
Patrícia Marostica Vitorelli
Marcela Savoldi
Camile P Semighini
Regina C de Oliveira
Luiz R Nunes
Luiz R Travassos
Rosana Puccia
Wagner L Batista
Leslie Ecker Ferreira
Júlio C Moreira
Ana Paula Bogossian
Fredj Tekaia
Marina Pasetto Nobrega
Francisco G Nobrega
Maria Helena S Goldman
Universidade do Vale do Paraíba · BRUniversidade de São Paulo · BRUniversidade Federal de São Paulo · BRUniversidade de Mogi das Cruzes · BRInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Paracoccidioides brasiliensis, a thermodimorphic fungus, is the causative agent of the prevalent systemic mycosis in Latin America, paracoccidioidomycosis. We present here a survey of expressed genes in the yeast pathogenic phase of P. brasiliensis. We obtained 13,490 expressed sequence tags from both 5' and 3' ends. Clustering analysis yielded the partial sequences of 4,692 expressed genes that were functionally classified by similarity to known genes. We have identified several Candida albicans virulence and pathogenicity homologues in P. brasiliensis. Furthermore, we have analyzed the expression of some of these genes during the dimorphic yeast-mycelium-yeast transition by real-time quantitative reverse transcription-PCR. Clustering analysis of the mycelium-yeast transition revealed three groups: (i) RBT, hydrophobin, and isocitrate lyase; (ii) malate dehydrogenase, contigs Pb1067 and Pb1145, GPI, and alternative oxidase; and (iii) ubiquitin, delta-9-desaturase, HSP70, HSP82, and HSP104. The first two groups displayed high mRNA expression in the mycelial phase, whereas the third group showed higher mRNA expression in the yeast phase. Our results suggest the possible conservation of pathogenicity and virulence mechanisms among fungi, expand considerably gene identification in P. brasiliensis, and provide a broader basis for further progress in understanding its biological peculiarities.

Indexed as

Expressed Sequence TagsGenome, FungalBase SequenceCandida albicansCandidiasisDNA, ComplementaryEnzymesGene Expression Regulation, EnzymologicGene Expression Regulation, FungalHumansMyceliumParacoccidioidesParacoccidioidomycosisRNA, MessengerDNA, ComplementaryEnzymesRNA, Messenger

Identifiers

PMID12582121
PMCPMC141168
OpenAlexW2160085634

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.