Evidence map›Paper›PMID 12582120›Full record

ArticleEukaryotic cell2003

Ssk1p response regulator binding surface on histidine-containing phosphotransfer protein Ypd1p.

Stace W Porter, Qingping Xu, Ann H West

Abstract read
In one paragraph

Article in Eukaryotic cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Stace W PorterDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma 73019, USA.
Qingping Xu
Ann H West

Funding

HISTIDINE TO ASPARTATE PHOSPHORYL TRANSFER IN YEASTR01GM059311 · NIGMS · UNIVERSITY OF OKLAHOMA NORMAN · PI WEST, ANN H · 1999 to 2008
$1.8M
NIGMS NIH HHS GM59311NIGMS NIH HHS R01 GM059311
6 · The paper itself

Abstract

Ypd1p, a histidine-containing phosphotransfer protein, plays an important role in a branched His-Asp phosphorelay signal transduction pathway that regulates cellular responses to hyperosmotic stress in Saccharomyces cerevisiae. Ypd1p is required for phosphoryl group transfer from the membrane-bound Sln1p sensor histidine kinase to two downstream response regulator proteins, Ssk1p and Skn7p. To investigate the molecular basis for interaction of Ypd1p with these response regulator domains, we used an approach that coupled alanine-scanning mutagenesis of surface-exposed residues in Ypd1p with a yeast two-hybrid interaction screen. Mutated residues that adversely affected the interaction of Ypd1p with the C-terminal response regulator domain of Ssk1p were identified and found to cluster on or near the alphaA helix in Ypd1p. Our results, supported by analysis of a modeled complex, identify a binding site on Ypd1p for response regulators that is composed of a cluster of conserved hydrophobic residues surrounded by less conserved polar residues. We propose that molecular interactions involving Ypd1p are mediated primarily through hydrophobic contacts, whereas binding specificity and strength of interaction may be influenced by select polar side chain interactions.

Indexed as

Binding SitesCell MembraneDNA-Binding ProteinsHistidineIntracellular Signaling Peptides and ProteinsModels, MolecularMolecular ConformationMolecular Sequence DataMolecular StructureMutagenesis, Site-DirectedMutationOsmotic PressurePhosphorylationProtein BindingProtein KinasesProtein Structure, TertiaryDNA-Binding ProteinsHistidineIntracellular Signaling Peptides and ProteinsProtein KinasesSaccharomyces cerevisiae ProteinsSSK1 protein, S cerevisiaeYPD1 protein, S cerevisiae

Identifiers

PMID12582120
PMCPMC141167

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.