Evidence map›Paper›PMID 12566406›Full record

ArticleGenome research2003

Complex events in the evolution of the human pseudoautosomal region 2 (PAR2).

Fadi J Charchar, Marta Svartman, Nisrine El-Mogharbel, Mario Ventura, Patrick Kirby, Maria R Matarazzo, Alfredo Ciccodicola, Mariano Rocchi, Maurizio D'Esposito, Jennifer A Marshall Graves

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Estimating bonobo (Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Article
  8. X-chromosome regulation and sex differences in brain anatomy.Neuroscience and biobehavioral reviews · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Escape From X-Chromosome Inactivation: An Evolutionary Perspective.Frontiers in cell and developmental biology · 2019
    Review
  13. Genetics of the human Y chromosome and its association with male infertility.Reproductive biology and endocrinology : RB&E · 2018
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. The contribution of female meiotic drive to the evolution of neo-sex chromosomes.Evolution; international journal of organic evolution · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 3 countries.

Fadi J CharcharDepartment of Genetics, La Trobe University, Bundoora, Victoria 3086, Australia. fjc4a@linmed.gla.ac.uk
Marta Svartman
Nisrine El-Mogharbel
Mario Ventura
Patrick Kirby
Maria R Matarazzo
Alfredo Ciccodicola
Mariano Rocchi
Maurizio D'Esposito
Jennifer A Marshall Graves
Australian National University · AU

Funding

Telethon E.0869Wellcome Trust
6 · The paper itself

Abstract

The 320-kb human pseudoautosomal region 2 (PAR2) at the tips of the long arms of the X and Y chromosomes is thought to have been duplicated onto the Y chromosome recently in primate evolution. The four genes within PAR2 have been proposed to constitute two zones with different base ratios and transcription, one of which was added recently to the X chromosome. To test this hypothesis, we cloned and mapped PAR2 genes in other species, the lemur, the cat, and a marsupial, the tammar wallaby. None of the human PAR2 genes colocalized with human PAR1 genes in the marsupial genome, confirming that the human PAR1 and PAR2 evolved independently. Of the four PAR2 genes, only SYBL1 was located on the X chromosome in all species, including marsupials, so it was part of the ancient X. HSPRY3 localized to the X in all the eutherians, but not marsupial, so it must have been added to the X 80-130 million years ago. CXYorf1 was present on the X in primates and also in mouse, but autosomal in wallaby, suggesting a later addition 70-130 million years ago, and IL9R was on the X only in primate, suggesting addition 60-70 million years ago. The results therefore demonstrate that at least two independent additions were necessary for PAR2 evolution. The present gene order on the human X also requires two inversions. The complicated evolutionary pathway supports the hypothesis that terminal interchromosomal rearrangements are common in regions unpaired at meiosis.

Indexed as

Evolution, MolecularAnimalsCatsChromosome MappingChromosomes, HumanHumansInterleukin-9Intracellular Signaling Peptides and ProteinsLemurMacropodidaeMembrane ProteinsMolecular Sequence DataProteinsReceptors, InterleukinReceptors, Interleukin-9R-SNARE ProteinsIL9R protein, humanInterleukin-9Intracellular Signaling Peptides and ProteinsMembrane ProteinsProteinsReceptors, InterleukinReceptors, Interleukin-9R-SNARE ProteinsSPRY3 protein, humanSybl1 protein, mouseVAMP7 protein, human

Identifiers

PMID12566406
PMCPMC420362
OpenAlexW2106247747

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.