Evidence map›Paper›PMID 12562512›Full record

ArticleJournal of neurochemistry2003

The basic helix-loop-helix differentiation factor Nex1/MATH-2 functions as a key activator of the GAP-43 gene.

Martine Uittenbogaard, Debra L Martinka, Anne Chiaramello

Open access · greenAbstract read
In one paragraph

Article in Journal of neurochemistry, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 32 citations in OpenAlex.

  1. βIII-Tubulin Gene Regulation in Health and Disease.Frontiers in cell and developmental biology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Martine UittenbogaardDepartment of Anatomy and Cell Biology, George Washington University Medical Center, 2300 I Street NW, Washington, DC 20037, USA.
Debra L Martinka
Anne Chiaramello
Washington University Medical Center · US

Funding

NEUROIMAGING COREP30HD040677 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI VITTORIO GALLO, VITTORIO GALLO VITTORIO GALLO · 2001 to 2015
$15.9M
Transcriptional Dynamics of Neuronal SurvivalR01NS041391 · NINDS · GEORGE WASHINGTON UNIVERSITY · PI CHIARAMELLO, ANNE ELIANE · 2001 to 2010
$2.4M
NICHD NIH HHS P30 HD040677NICHD NIH HHS P30 HD 40677NINDS NIH HHS R01 NS041391NINDS NIH HHS R01 NS 41391
6 · The paper itself

Abstract

Nex1/MATH-2 is a neurogenic basic Helix-Loop-Helix (bHLH) transcription factor that belongs to the NeuroD subfamily. Its expression parallels that of the GAP-43 gene and peaks during brain development, when neurite outgrowth and synaptogenesis are highly active. We previously observed a direct correlation between the levels of expression of Nex1 and GAP-43 proteins, which resulted in extensive neurite outgrowth and neuronal differentiation of PC12 cells in the absence of nerve growth factor. Since the GAP-43 gene is a target for bHLH regulation, we investigated whether Nex1 could regulate the activity of the GAP-43 promoter. We found that among the members of the NeuroD subfamily, Nex1 promoted maximal activity of the GAP-43 promoter. The Nex1-mediated activity is restricted to the conserved E1-E2 cluster located near the major transcription start sites. By electrophoretic mobility shift assay and site-directed mutagenesis, we showed that Nex1 binds as homodimers and that the E1 E-box is a high affinity binding site. We further found that Nex1 released the ME1 E-protein-mediated repression in a concentration dependent manner. Thus, the E1-E2 cluster has a dual function: it can mediate activation or repression depending on the interacting bHLH proteins. Finally, a series of N-terminal and C-terminal deletions revealed that Nex1 transcriptional activity is linked to two distinct transactivation domains, TAD1 and TAD2, with TAD1 being unique to Nex1. Together, our results suggest that Nex1 may engage in selective interactions with components of the core transcriptional machinery whose assembly is dictated by the architecture of the GAP-43 promoter and cellular environment.

Indexed as

Helix-Loop-Helix MotifsXenopus ProteinsAnimalsBasic Helix-Loop-Helix ProteinsCell DifferentiationCell LineDNA-Binding ProteinsE-Box ElementsGAP-43 ProteinGene Expression RegulationMiceMutagenesis, Site-DirectedNerve Tissue ProteinsNeuroblastomaPromoter Regions, GeneticProtein Structure, TertiaryBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsGAP-43 ProteinNerve Tissue ProteinsNeurod6 protein, mouseTcf12 protein, mouseTCF12 protein, XenopusTranscription FactorsXenopus Proteins

Identifiers

PMID12562512
PMCPMC1413589
OpenAlexW1702501877

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.