Evidence map›Paper›PMID 12557125›Full record

ArticleAmerican journal of human genetics2003

The constitutional t(17;22): another translocation mediated by palindromic AT-rich repeats.

Hiroki Kurahashi, Tamim Shaikh, Masayuki Takata, Tatsushi Toda, Beverly S Emanuel

Abstract read
In one paragraph

Article in American journal of human genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
  2. Article
  3. Hotspots of Human Mutation.Trends in genetics : TIG · 2021
    Review
  4. Palindromes in DNA-A Risk for Genome Stability and Implications in Cancer.International journal of molecular sciences · 2021
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Decoding NF1 Intragenic Copy-Number Variations.American journal of human genetics · 2015
    Article
  11. Article
  12. Article
  13. Article
  14. The genetics of microdeletion and microduplication syndromes: an update.Annual review of genomics and human genetics · 2014
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Chromosomal translocations and palindromic AT-rich repeats.Current opinion in genetics & development · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hiroki KurahashiDivision of Human Genetics and Molecular Biology, the Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Tamim Shaikh
Masayuki Takata
Tatsushi Toda
Beverly S Emanuel

Funding

TRANSGENIC MOUSE MODELS OF MENTAL RETARDATIONP30HD026979 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI ROBERTS, TIMOTHY P · 1990 to 2015
$15.3M
VELOCARDIOFACIAL SYNDROME--MOLECULAR &CLINICAL STUDIESP01DC002027 · NIDCD · CHILDREN'S HOSPITAL OF PHILADELPHIA · PI EMANUEL, BEVERLY S · 1994 to 2003
$6.4M
CYTOGENETIC AND MOLECULAR STUDIES OF HUMAN CHROMOSOME 22R01CA039926 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI EMANUEL, BEVERLY S · 1985 to 2013
$4.0M
NCI NIH HHS CA39926NCI NIH HHS R01 CA039926NICHD NIH HHS HD26979NICHD NIH HHS P30 HD026979NIDCD NIH HHS DC02027NIDCD NIH HHS P01 DC002027
6 · The paper itself

Abstract

We have demonstrated that the breakpoints of the constitutional t(11;22) are located at palindromic AT-rich repeats (PATRRs) on 11q23 and 22q11. As a mechanism for this recurrent translocation, we proposed that the PATRR forms a cruciform structure that induces the genomic instability leading to the rearrangement. A patient with neurofibromatosis type 1 (NF1) had previously been found to have a constitutional t(17;22) disrupting the NF1 gene on 17q11. We have localized the breakpoint on 22q11 within the 22q11-specific low-copy repeat where the breakpoints of the constitutional t(11;22)s reside, implying a similar palindrome-mediated mechanism for generation of the t(17;22). The NF1 gene contains a 195-bp PATRR within intron 31. We have isolated the junction fragments from both the der(17) and the der(22). The breakpoint on 17q11 is close to the center of the PATRR. A published breakpoint of an additional NF1-afflicted patient with a constitutional t(17;22) is also located close to the center of the same PATRR. Our data lend additional support to the hypothesis that PATRR-mediated genomic instability can lead to a variety of translocations.

Indexed as

Chromosomes, Human, Pair 17Chromosomes, Human, Pair 22Base SequenceCentromereChromosome MappingChromosomes, Human, Pair 11Dinucleotide RepeatsExonsHumansIn Situ Hybridization, FluorescenceIntronsMolecular Sequence DataNeurofibromin 1TelomereNeurofibromin 1

Identifiers

PMID12557125
PMCPMC1180249

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.