Evidence map›Paper›PMID 12556504›Full record

ArticleMolecular and cellular biology2003

Maintenance of open chromatin and selective genomic occupancy at the cell cycle-regulated histone H4 promoter during differentiation of HL-60 promyelocytic leukemia cells.

Hayk Hovhannisyan, Brian Cho, Partha Mitra, Martin Montecino, Gary S Stein, Andre J Van Wijnen, Janet L Stein

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. The abbreviated pluripotent cell cycle.Journal of cellular physiology · 2013
    Review
  6. Article
  7. Review
  8. Article
  9. Transcriptional corepressor TLE1 functions with Runx2 in epigenetic repression of ribosomal RNA genes.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  10. The histone gene activator HINFP is a nonredundant cyclin E/CDK2 effector during early embryonic cell cycles.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Mitotic retention of gene expression patterns by the cell fate-determining transcription factor Runx2.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hayk HovhannisyanDepartment of Cell Biology, University of Massachusetts Medical School, Worcester, Massachusetts 01655, USA.
Brian Cho
Partha Mitra
Martin Montecino
Gary S Stein
Andre J Van Wijnen
Janet L Stein

Funding

IDENTIFICATION OF HUMAN HISTONE GENE REGULATORY SEQUENCER01GM032010 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STEIN, GARY S. · 1985 to 2006
$3.4M
NIGMS NIH HHS GM32010NIGMS NIH HHS R01 GM032010
6 · The paper itself

Abstract

During the shutdown of proliferation and onset of differentiation of HL-60 promyelocytic leukemia cells, expression of the cell cycle-dependent histone genes is downregulated at the level of transcription. To address the mechanism by which this regulation occurs, we examined the chromatin structure of the histone H4/n (FO108, H4FN) gene locus. Micrococcal nuclease, DNase I, and restriction enzymes show similar cleavage sites and levels of sensitivity at the H4/n locus in both proliferating and differentiated HL-60 cells. In contrast, differentiation-related activation of the cyclin-dependent kinase inhibitor p21(cip1/WAF1) gene is accompanied by increased nuclease hypersensitivity. Chromatin immunoprecipitation assays of the H4/n gene reveal that acetylated histones H3 and H4 are maintained at the same levels in proliferating and postproliferative cells. Thus, the chromatin of the H4/n locus remains in an open state even after transcription ceases. Using ligation-mediated PCR to visualize genomic DNase I footprints at single-nucleotide resolution, we find that protein occupancy at the site II cell cycle element is selectively diminished in differentiated cells while the site I element remains occupied. Decreased occupancy of site II is reflected by loss of the site II binding protein HiNF-P. We conclude that H4 gene transcription during differentiation is downregulated by modulating protein interaction at the site II cell cycle element and that retention of an open chromatin conformation may be associated with site I occupancy.

Indexed as

AcetylationCell CycleCell DifferentiationCell LineageChromatinDeoxyribonuclease IDown-RegulationGene Expression RegulationHistonesHL-60 CellsHumansMacrophagesMicrococcal NucleaseMonocytesNucleosomesPromoter Regions, GeneticChromatinDeoxyribonuclease IHINFP protein, humanHistonesMicrococcal NucleaseNucleosomesProteinsRepressor ProteinsTranscription Factors

Identifiers

PMID12556504
PMCPMC141140

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.