Evidence map›Paper›PMID 12554672›Full record

ArticleThe EMBO journal2003

A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins.

Akeel A Mahdi, Geoffrey S Briggs, Gary J Sharples, Qin Wen, Robert G Lloyd

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Conserved motifs in the flavivirus NS3 RNA helicase enzyme.Wiley interdisciplinary reviews. RNA · 2022
    Review
  3. Review
  4. Review
  5. Article
  6. A Peek Inside the Machines of Bacterial Nucleotide Excision Repair.International journal of molecular sciences · 2021
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. SSB and the RecG DNA helicase: an intimate association to rescue a stalled replication fork.Protein science : a publication of the Protein Society · 2017
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. I came to a fork in the DNA and there was RecG.Progress in biophysics and molecular biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Akeel A MahdiInstitute of Genetics, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, UK.
Geoffrey S Briggs
Gary J Sharples
Qin Wen
Robert G Lloyd
University of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RecG protein differs from other helicases analysed to atomic resolution in that it mediates strand separation via translocation on double-stranded (ds) rather than single-stranded (ss) DNA. We describe a highly conserved helical hairpin motif in RecG and show it to be important for helicase activity. It places two arginines (R609 and R630) in opposing positions within the component helices where they are stabilized by a network of hydrogen bonds involving a glutamate from helicase motif VI. We suggest that disruption of this feature, triggered by ATP hydrolysis, moves an adjacent loop structure in the dsDNA-binding channel and that a swinging arm motion of this loop drives translocation. Substitutions that reverse the charge at R609 or R630 reduce DNA unwinding and ATPase activities, and increase dsDNA binding, but do not affect branched DNA binding. Sequences forming the helical hairpin and loop structures are highly conserved in Mfd protein, a transcription-coupled DNA repair factor that also translocates on dsDNA. The possibility of type I restriction enzymes and chromatin-remodelling factors using similar structures to drive translocation on dsDNA is discussed.

Indexed as

Protein Structure, TertiaryAdenosine TriphosphateAmino Acid SequenceArginineBacterial ProteinsDNADNA-Binding ProteinsDNA HelicasesDNA ReplicationEscherichia coli ProteinsHydrogen BondingModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedProtein Structure, SecondarySequence AlignmentAdenosine TriphosphateArginineBacterial ProteinsDNADNA-Binding ProteinsDNA HelicasesEscherichia coli ProteinsRecG protein, E coliTranscription Factorstranscription repair coupling factor protein, Bacteria

Identifiers

PMID12554672
PMCPMC140728
OpenAlexW1979692410

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.