Evidence map›Paper›PMID 12547916›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Chromatin insulation by a transcriptional activator.

Nathan B Sutter, David Scalzo, Steven Fiering, Mark Groudine, David I K Martin

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Nathan B SutterDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
David Scalzo
Steven Fiering
Mark Groudine
David I K Martin
Fred Hutch Cancer Center · USUNSW Sydney · AU

Funding

MAINTENANCE OF GENE EXPRESSION IN THE RED CELL LINEAGER01HL065440 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 2000 to 2018
$12.4M
MAINTENANCE AND REGULATION OF GLOBIN GENE EXPRESSIONR01HL057620 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI GROUDINE, MARK T · 1996 to 1999
–
NHLBI NIH HHS HL478790NHLBI NIH HHS HL57620NHLBI NIH HHS HL65440NHLBI NIH HHS R01 HL065440
6 · The paper itself

Abstract

In eukaryotic genomes, transcriptionally active regions are interspersed with silent chromatin that may repress genes in its vicinity. Chromatin insulators are elements that can shield a locus from repressive effects of flanking chromatin. Few such elements have been characterized in higher eukaryotes, but transcriptional activating elements are an invariant feature of active loci and have been shown to suppress transgene silencing. Hence, we have assessed the ability of a transcriptional activator to cause chromatin insulation, i.e., to relieve position effects at transgene integration sites in cultured cells. The transgene contained a series of binding sites for the metal-inducible transcriptional activator MTF, linked to a GFP reporter. Clones carrying single integrated transgenes were derived without selection for expression, and in most clones the transgene was silent. Induction of MTF resulted in transition of the transgene from the silent to the active state, prolongation of the active state, and a marked narrowing of the range of expression levels at different genomic sites. At one genomic site, prolonged induction of MTF resulted in suppression of transgene silencing that persisted after withdrawal of the induction stimulus. These results are consistent with MTF acting as a chromatin insulator and imply that transcriptional activating elements can insulate active loci against chromatin repression.

Indexed as

Transcriptional ActivationCell LineCell SeparationChromatinDNA-Binding ProteinsDose-Response Relationship, DrugFlow CytometryGenes, ReporterGreen Fluorescent ProteinsHumansK562 CellsLuminescent ProteinsPlasmidsProtein Structure, TertiaryTime FactorsTranscription Factor MTF-1ChromatinDNA-Binding ProteinsGreen Fluorescent ProteinsLuminescent ProteinsTranscription Factor MTF-1Transcription Factors

Identifiers

PMID12547916
PMCPMC298734
OpenAlexW1986130217

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.