Evidence map›Paper›PMID 12538873›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Without peripheral interference, thymic deletion is mediated in a cohort of double-positive cells without classical activation.

Yifan Zhan, Jared F Purton, Dale I Godfrey, Timothy J Cole, William R Heath, Andrew M Lew

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Examination of thymic positive and negative selection by flow cytometry.Journal of visualized experiments : JoVE · 2012
    Article
  4. Review
  5. Central tolerance: what have we learned from mice?Seminars in immunopathology · 2008
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yifan ZhanThe Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Melbourne 3050, Australia.
Jared F Purton
Dale I Godfrey
Timothy J Cole
William R Heath
Andrew M Lew
Monash University · AUUniversity of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peripheral activation can cause bystander thymocyte death by eliciting a "cytokine storm." This event complicates in vivo studies using exogenous ligand-induced models of negative selection. A stable transgenic model that selectively eliminates peripheral CD4 cells has allowed us to analyze negative selection as direct cognate events in two T cell receptor transgenic mice, OT-II and DO11. Whereas cognate peptide induced a massive deletion in double-positive (DP) cells in mice with peripheral CD4 cells, this DP deletion was modest in mice lacking peripheral CD4 cells. Using BrdUrd and annexin V staining, we found that negative selection primarily occurs in a cohort of DP cells and the absence of single-positive (SP) cells is largely caused by reduction in the cohort of DP precursors. Moreover, the fates of DP cells and SP cells after antigen exposure were vastly different. Whereas SP cells up-regulated uniformly their CD69 and CD44 levels, increased their cell size, and survived after antigen exposure, DP cells had less CD69 and CD44 up-regulation, no size change, and promptly died. Thus, negative selection represents an "abortive" activation different from activation-induced cell death of mature T cells.

Indexed as

Clonal DeletionAnimalsAnnexin A5AntigensAntigens, CDAntigens, Differentiation, T-LymphocyteApoptosisBromodeoxyuridineCD4-Positive T-LymphocytesCD69 AntigensCD8-Positive T-LymphocytesColoring AgentsEnzyme ActivationFlow CytometryHyaluronan ReceptorsImmunophenotypingAnnexin A5AntigensAntigens, CDAntigens, Differentiation, T-LymphocyteBromodeoxyuridineCD69 AntigensColoring AgentsHyaluronan ReceptorsLectins, C-TypeLigandsPeptides

Identifiers

PMID12538873
PMCPMC298750
OpenAlexW2141869563

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.