Evidence map›Paper›PMID 12538663›Full record

ArticleThe Journal of experimental medicine2003

DNA methylation maintains allele-specific KIR gene expression in human natural killer cells.

Huei-Wei Chan, Zoya B Kurago, C Andrew Stewart, Michael J Wilson, Maureen P Martin, Brian E Mace, Mary Carrington, John Trowsdale, Charles T Lutz

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 212 citations in OpenAlex.

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  15. Nature and nurture: understanding phenotypic variation in inborn errors of immunity.Frontiers in cellular and infection microbiology · 2023
    Review
  16. Consistent DNA Hypomethylations in Prostate Cancer.International journal of molecular sciences · 2022
    Article
  17. Phyloepigenetics.Biology · 2022
    Article
  18. Article
  19. Article
  20. Review

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Huei-Wei ChanDepartment of Pathology, University of Iowa, Iowa City, IA 52242, USA.
Zoya B Kurago
C Andrew Stewart
Michael J Wilson
Maureen P Martin
Brian E Mace
Mary Carrington
John Trowsdale
Charles T Lutz
University of Cambridge · GBNational Cancer Institute · USScience Applications International Corporation (United States) · USUniversity of Dental Medicine · MMUniversity of Iowa · US

Funding

Wellcome Trust
6 · The paper itself

Abstract

Killer immunoglobulin-like receptors (KIR) bind self-major histocompatibility complex class I molecules, allowing natural killer (NK) cells to recognize aberrant cells that have down-regulated class I. NK cells express variable numbers and combinations of highly homologous clonally restricted KIR genes, but uniformly express KIR2DL4. We show that NK clones express both 2DL4 alleles and either one or both alleles of the clonally restricted KIR 3DL1 and 3DL2 genes. Despite allele-independent expression, 3DL1 alleles differed in the core promoter by only one or two nucleotides. Allele-specific 3DL1 gene expression correlated with promoter and 5' gene DNA hypomethylation in NK cells in vitro and in vivo. The DNA methylase inhibitor, 5-aza-2'-deoxycytidine, induced KIR DNA hypomethylation and heterogeneous expression of multiple KIR genes. Thus, NK cells use DNA methylation to maintain clonally restricted expression of highly homologous KIR genes and alleles.

Indexed as

DNA MethylationAllelesCell LineClone CellsGene ExpressionHistocompatibility Antigens Class IHumansKiller Cells, NaturalReceptors, ImmunologicReceptors, KIRReceptors, KIR2DL4Receptors, KIR3DL1Receptors, KIR3DL2Histocompatibility Antigens Class IKIR2DL4 protein, humanReceptors, ImmunologicReceptors, KIRReceptors, KIR2DL4Receptors, KIR3DL1Receptors, KIR3DL2

Identifiers

PMID12538663
PMCPMC2193817
OpenAlexW2081246637

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.