ReviewGenome biology2002
An integrated computational pipeline and database to support whole-genome sequence annotation.
Review in Genome biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
32 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.Genome biology · 2002Pooled it
- A conceptual framework for human-AI collaborative genome annotation.Briefings in bioinformatics · 2025Review
- Gene-methylation interactions: discovering region-wise DNA methylation levels that modify SNP-associated disease risk.Clinical epigenetics · 2020Article
- AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.Database : the journal of biological databases and curation · 2018Article
- xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud.The Plant cell · 2016Article
- Article
- Transposition-driven genomic heterogeneity in the Drosophila brain.Science (New York, N.Y.) · 2013Article
- A beginner's guide to eukaryotic genome annotation.Nature reviews. Genetics · 2012Review
- The Viking viewer for connectomics: scalable multi-user annotation and summarization of large volume data sets.Journal of microscopy · 2011Article
- Article
- Duplication count distributions in DNA sequences.Physical review. E, Statistical, nonlinear, and soft matter physics · 2008Article
- A Java-based fMRI processing pipeline evaluation system for assessment of univariate general linear model and multivariate canonical variate analysis-based pipelines.Neuroinformatics · 2008Article
- Large-scale trends in the evolution of gene structures within 11 animal genomes.PLoS computational biology · 2006Article
- Automated methods of predicting the function of biological sequences using GO and BLAST.BMC bioinformatics · 2005Article
- Combined evidence annotation of transposable elements in genome sequences.PLoS computational biology · 2005Article
- Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster.Proceedings of the National Academy of Sciences of the United States of America · 2005Article
- A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome.Proceedings of the National Academy of Sciences of the United States of America · 2005Article
- The Sequence Ontology: a tool for the unification of genome annotations.Genome biology · 2005Article
- The Ensembl core software libraries.Genome research · 2004Review
- The otter annotation system.Genome research · 2004Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
16 authors.
Funding
Abstract
We describe here our experience in annotating the Drosophila melanogaster genome sequence, in the course of which we developed several new open-source software tools and a database schema to support large-scale genome annotation. We have developed these into an integrated and reusable software system for whole-genome annotation. The key contributions to overall annotation quality are the marshalling of high-quality sequences for alignments and the design of a system with an adaptable and expandable flexible architecture.
Indexed as
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.