Evidence map›Paper›PMID 12529314›Full record

ArticleGenome research2003

Multiple cross and inbred strain haplotype mapping of complex-trait candidate genes.

Yeong-Gwon Park, Robert Clifford, Kenneth H Buetow, Kent W Hunter

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
  2. Review
  3. The role of individual inheritance in tumor progression and metastasis.Journal of molecular medicine (Berlin, Germany) · 2015
    Review
  4. Article
  5. Article
  6. Article
  7. Forward genetic approaches to understanding complex behaviors.Current topics in behavioral neurosciences · 2012
    Review
  8. Article
  9. Article
  10. Cancer evolution and individual susceptibility.Integrative biology : quantitative biosciences from nano to macro · 2011
    Review
  11. Review
  12. Review
  13. Assessing the prospects of genome-wide association studies performed in inbred mice.Mammalian genome : official journal of the International Mammalian Genome Society · 2010
    Article
  14. Review
  15. Lessons in signaling and tumorigenesis from polyomavirus middle T antigen.Microbiology and molecular biology reviews : MMBR · 2009
    Review
  16. Fine mapping of an epilepsy modifier gene on mouse Chromosome 19.Mammalian genome : official journal of the International Mammalian Genome Society · 2009
    Article
  17. Review
  18. Article
  19. Quantitative trait loci for BMD in an SM/J by NZB/BlNJ intercross population and identification of Trps1 as a probable candidate gene.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2008
    Article
  20. Mouse modifier genes in mammary tumorigenesis and metastasis.Journal of mammary gland biology and neoplasia · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yeong-Gwon ParkLaboratory of Population Genetics, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Robert Clifford
Kenneth H Buetow
Kent W Hunter
National Institutes of Health · US

Funding

GENETIC MODIFIERS OF MAMMARY CANCER INITIATION/ PROGRESSZ01CP010146 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI HUNTER, KENT WILLIAM · 2000 to 2008
$3.3M
Genetic Modifiers of Intitiation and Progression of Mammary CancerZIACP010146 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI HUNTER, KENT WILLIAM · 2009 to 2009
$1.7M
6 · The paper itself

Abstract

Identifying complex-trait candidate genes after initial low-resolution mapping has proven to be a difficult and labor-intensive undertaking, usually requiring years to develop and analyze congenic strains. As a result, to date, few complex-trait genes have been discovered. Recently it was suggested that SNP haplotype analysis in inbred strains might be useful for mapping of complex traits. In this study, we have combined medium-resolution haplotype mapping with multiple experimental cross-mapping experiments to reduce the number of potential candidate genes in a complex-trait candidate interval. Coincident mapping of a modifier gene in multiple experimental crosses using different inbred strains is consistent with the common inheritance of a modifier allele. A haplotype map was developed in four inbred strains of mice used in our complex-trait mapping crosses across the proximal 10 cM of proximal Chromosome 19 to identify haplotype blocks that segregate appropriately. Only ~23 out of >400 genes met this criteria. This strategy coupled with tissue and expression arrays, as well as our recently described common pathway analysis to reduce the number of high-priority candidates, may provide a rapid, efficient method to identify and prioritize complex-trait candidate genes without requiring construction of congenic mouse strains.

Indexed as

Crosses, GeneticAnimalsChromosome MappingGenesHaplotypesMiceMice, Inbred AKRMice, Inbred C57BLMice, Inbred DBAMice, Inbred NZBMice, Inbred StrainsQuantitative Trait Loci

Identifiers

PMID12529314
PMCPMC430946
OpenAlexW2068749775

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.